BAC Information

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BAC

Clone NameMSMg01-461N04
Chromosome5 (Build37)
Map Location 5,708,638 - 5,709,004
singlet/doubletsinglet
Overlap genenone
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2
Downstream geneSteap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461N04.T7 (MSMg01no461_n04.b1)MSMg01-461N04.TJ (MSMg01no461_n04.g1)
ACCAG546855AG546856
length818754
length of high quality
(start - end)
---380 (78 - 457)
definitionCHROMAT_FILE: MSMg01no461_n04.b1 PHD_FILE: MSMg01no461_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:34 2005CHROMAT_FILE: MSMg01no461_n04.g1 PHD_FILE: MSMg01no461_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTCNNNNCNNNCCCNNNNCCNNCCCCCTTTTCCCACACANCCCCN
NNAANCACNNNCTTTCCCACANCCCCCCNCACCCCCNCCTCCAAAACACT
CANNCTGAAACNCNAACAACNGNCNGNTTCTGCNACTTACTGNCAAACAN
CCTCTCCAANTTTCNNNNATCAACCAAAAACCCCCCCACCCNTAACCACA
CAAACCCCTGCCCTCCCNCCCCCCACCGCCCCCATCTTCTTTTTTTGTTG
GGAGGGGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGT
GTGGGGGGGGGGGGGGGGGGGGGGGGGCGTTGGGGAGGTATGTGGTGTGA
GTGTGCCTTGTGTGNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNCNNCNNNNNNNNNCCCCC
CCNCCCCNCCCCCCCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCNCCCCC
CCNCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCNCCCCCCC
CCCCCCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCNNCCCCCCCCCT
CCCTCCAATTTTTTTTTG
TCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAATTATTTTTTTAGAAATAA
ACGATGCTCTGCTTTCATAAAATTTGAACATTTTACTTAACTATATTTTA
AAAATAAGTGAGCTAGGCCAAATATAAAAATATTTAGAAATGAGTAGAAT
TTTAAAAATTAATAAGACGTAGGGAAGATCTGGGACGAGCTGGGGTAGAA
GAAAAACATGATCAAAACACTGTTATGAAAAAATCTAGTTAAAAATAAAT
TAATCAAATTTTAAAAAGGTTAATAAAACAGAGCTTCAAACAGACTTCGG
TTTTCACATCTTTGTCCTTGCTAATCCCTCTGATCCCTCACAGTCACGAA
GGTCAAACACTGTGTTTATAGAACCTGCAGTTGGATTTGCTTCTTAGAGC
TAGTTTCTCTGGTTCTGACAAACCGGGTTTATAACTCTGGAGACAACTTA
TTTATTTTCAGAACCTGGTATCTTAACCCGAACATCCAGTGGATGAAGAA
ATAGTATGAAACTGTGATATGAAACCTTTTGTGACTTTTTGAAGTAACCT
CTTTTATGAAGATAAGGTTTTGCATAGGATCCGTTTAAACCTGCCCTTTT
AAAACGTGTCTCTCCCCCTTCACTTGATCAACAACGGCTCCCCACATCTT
TTTTCCATTTTACTCCTTTCCCTTCATCTGTGGCGTCCGCGGGGTCTCCT
CTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_n04.g1 MSMg01no461_n04.g1 CHROMAT_FILE:
MSMg01no461_n04.g1 PHD_FILE: MSMg01no461_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:34 2005
         (380 letters)



>mm_chr5_5708225_5709004
          Length = 780

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%), Gaps = 1/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  tagaaataaacgatgctctgctttcataaaatttgaacattttacttaactatattttaa 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tagaaataaacgatgctctgctttcataaaatttgaacattttacttaactatattttaa 721

                                                                       
Query: 75  aaataagtgagctaggccaaatataaaaatatttagaaatgagtagaattttaaaaatta 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaataagtgagctaggccaaatataaaaatatttagaaatgagtagaattttaaaaatta 661

                                                                       
Query: 135 ataagacgtagggaagatctgggacgagctggggtagaagaaaaacatgatcaaaacact 194
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 660 ataagacgtagggaagatctgggacgagctggggtagaagaaaaacatgatcgaaacact 601

                                                                       
Query: 195 gttatgaaaaaa-tctagttaaaaataaattaatcaaattttaaaaaggttaataaaaca 253
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttatgaaaaaaatctagttaaaaataaattaatcaaattttaaaaaggttaataaaaca 541

                                                                       
Query: 254 gagcttcaaacagacttcggttttcacatctttgtccttgctaatccctctgatccctca 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gagcttcaaacagacttcggttttcacatctttgtccttgctaatccctctgatccctca 481

                                                                       
Query: 314 cagtcacgaaggtcaaacactgtgtttatagaacctgcagttggatttgcttcttagagc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagtcacgaaggtcaaacactgtgtttatagaacctgcagttggatttgcttcttagagc 421

                  
Query: 374 tagtttc 380
           | |||||
Sbjct: 420 tggtttc 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)