BAC Information

Click to search

BAC

Clone NameMSMg01-462D19
Chromosome5 (Build37)
Map Location 42,557,381 - 42,557,549
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462D19.T7 (MSMg01no462_d19.b1)MSMg01-462D19.TJ (MSMg01no462_d19.g1)
ACCAG547172AG547173
length794754
length of high quality
(start - end)		169 (75 - 243)538 (79 - 616)
definitionCHROMAT_FILE: MSMg01no462_d19.b1 PHD_FILE: MSMg01no462_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:11 2005CHROMAT_FILE: MSMg01no462_d19.g1 PHD_FILE: MSMg01no462_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCATTATTNCTTTCGTTTCAAACCTAAGCAACTCACTTAAATCC
AGCCTTGACCCAGACCCAACACTGAAACTCTTGTCTGAAAACCCAAGGAC
TAAGTGATATGTTTTTGGTTGGCCACTATTCCTTTAGTGCAAGCATAATG
TGCTTATTATAGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNN
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTATTNTNTTTTTTTTNTTTTTT
TTTNTTTTTTTTTTTTTTCCTTCCTTTTTTTTTTTCTTTTTTNTTTTTTC
TCTCTTTTTTTTTTTCTTCTTTTCCCCTCCCCCTTCTCTTTTTCTTTTAT
CTTCCTCTCTCTCCTCTTTCTTTTTTTATTCTCTTTTCCCCTATCTCCTT
TTTCTTCCCCCACCCTTAAATAATCTATATTACCCCCCCATTTCTTCATT
CTCAAATTTTTCACTTAATTACATTTTATTCTTTACCTATTATTATCTTC
ATCCAACCTATTTTATAACTTCATATATATTATCTTACTCTCCCTTTTAC
TTCTCAATTCTTCCCTATCTTAAACTTTATACCAATTTACATTTTTATTA
TTTCCCATTCTTCCCTATCTACAATATACTATACATTCTAATACATCTCT
ACTTCACTCTCTACTACTCCTACCCTTTTATTTTTCTATTCCCC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTGAGGAATACTGAATGG
CTGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTTAGGTGACAGCAGATGCTGTCAAGGATGTGGAGGAAGA
GGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAGTCAGTCTTGTGGTTCCTCAGAAAATTGGACATAGTAGTACTGTAAG
ATCCAGCAATACCTCTCCTTGGCATATACCCAGAATATGTTCCAACTGGT
AATAAATACACATGTTCTACTATGTCCATAGCAGCCTTATTTATAATGGC
CAGAATCTGGAAAGAACCCAGATGTCCCTCAACAGAGATATGGATGCAGA
AAATGTGGTGCATTCACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCTTGGGCAAATGGATGTATCTGGAGGATATCATCCT
TAGTGAGGAAACCCAATCACAAAGAAGTCACTTGAAATGCCCTCACTGAT
ACGTGGATATTACCCCAGAACCTTAGAATACCCAGATACCATTTGCAAAA
TTCCAGACAATCTGGAAAAAAGGAAGACCCACCTGGTAAAACTTTCTTTC
CTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_d19.b1 MSMg01no462_d19.b1 CHROMAT_FILE:
MSMg01no462_d19.b1 PHD_FILE: MSMg01no462_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:11 2005
         (169 letters)



>mm_chr5_42557181_42557749
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacctaagcaactcacttaaatccagccttgacccagacccaacactgaaactcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacctaagcaactcacttaaatccagccttgacccagacccaacactgaaactcttgt 260

                                                                       
Query: 61  ctgaaaacccaaggactaagtgatatgtttttggttggccactattcctttagtgcaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaaacccaaggactaagtgatatgtttttggttggccactattcctttagtgcaagc 320

                                                            
Query: 121 ataatgtgcttattataggtatgtgtgtgtgtgtgtgtgtgtgtgtgtg 169
           |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ataatgtgcttattataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |