BAC Information

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BAC

Clone NameMSMg01-462E06
Chromosome5 (Build37)
Map Location 116,085,030 - 116,085,312
singlet/doubletsinglet
Overlap geneRab35
Upstream geneTrpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199
Downstream geneCcdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462E06.T7 (MSMg01no462_e06.b1)MSMg01-462E06.TJ (MSMg01no462_e06.g1)
ACCAG547194AG547195
length762838
length of high quality
(start - end)
286 (327 - 612)174 (73 - 246)
definitionCHROMAT_FILE: MSMg01no462_e06.b1 PHD_FILE: MSMg01no462_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:13 2005CHROMAT_FILE: MSMg01no462_e06.g1 PHD_FILE: MSMg01no462_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAATGCGCGGAA
TTCTCCAGGACTTACACCTCCCTTCCCTCACCCTATGTGTTCATTCAGAG
CCATGAGCTGAGCCCAGGACTTCATAGCTACCATCTAAATGCCCCTCCAC
AAGCTGACAGTCTCAGTGAAGCCATGCTACACAATGCTATTACAGCAGCA
TCCCCAGCCGCCAGGGAAGCAGCGCTCAAAACTTGAGGGGCAGGAGACGG
CTTGATTTTTTCCCCCCCTTAGACAGGGTTTGGCTGGCCTGGAACTCTCA
ATGCAGACCAAACTGGTCTCTTTTTCACAAAGCCACCTACCTGTGCTGAT
TTCAAGATGTGCAATACCACATCTGGCTGCCAACACCACCTCCATCATCA
CTACCACCACCCTTACCACCTCTATTATCACCACCATCATCAATCATTAT
CACCAACATCAATTATCCTAGTCTCATGTATCTATAATAGCCAAGGGAGA
GAGAGGTACCATCCGCAGTGCCAGCAAGGACTTGAAATCCTTGGCTGCAG
AAAACCCACTAGTCACAACATGGTCTGCTGCCATGGGACTTGATACCAAC
CTCCAACTCTGCTCTTCCTGAGAGGAATAGAAACCAAGACGTGCCACCTC
CCATATATCCCAGCTGCTATCTACCCTACAGATGCACCCAATGAAGAATC
CCAGGGCCCACCTTCCAGGAAAGCAACAACTTTCTTCTGCCACCAAACCT
GAAGGCTTGGTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAATTACACTCACTTTGTGGACCAGGCTGGCCTCG
AACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGTTGTTTTGTT
TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGGGTTTCTCTGTG
TAGCCCTGACTATCCTGGACTGGAACTCACTCTGTAGACCAGGCTGTTTT
TTTACTCAGAGATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG
TGTGTACGACCACTTTTCTTCTTTTTCATCCAGAGAAGCCCTGAGTTCAA
TTCTCATTTTTTTCATCGACGNGACTCAAAATCCATCTGTAATGTCTATC
TTGTCGTCCTCTTCTGGCCACCCATGCTGTATTTTCACCATTTTTTTCAC
CTTTACCTTTTAGATTGTTATGCCATTTATCGTACGTCACTTTCTCATCT
TATCTCCTCCATTTTCCAGTTCTTCTTTCCCTTTTCTCCACTGTTTTATT
CCTTCCTCTTTCTTCTTCTTCTTCCTTAACTTTTTCTCTTCTTTTTTCTT
TAATTTTCTTACACGACTCTTTCCTACCACTTTTTTTTACTGTCATCTAT
CTTTCATTCCCTTTTCCTTCTATTTTCTCCACTTTATTCATTATTATATT
TTTTTTCTTCTTTTTTACTCTTTCTTTCTTTTTAATTCTCTCTTCCTTTC
CCCTTCCCCATTTTCCTTTTCCTTCCTTTTCTTTCTTCCACTCCTTCCTT
TTTTCTCCCCATCTTTCTTCCTCTCCTTTCTCAATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_e06.b1 MSMg01no462_e06.b1 CHROMAT_FILE:
MSMg01no462_e06.b1 PHD_FILE: MSMg01no462_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:13 2005
         (286 letters)



>mm_chr5_116084701_116085386
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 281/286 (98%), Gaps = 3/286 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaagccacctacctgtgctgatttcaagatgtgcaataccacatctggctgccaacac 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 612 acaaagccacctacctgtgctggtttcaagatgtgcaataccacatctggctgccgacac 553

                                                                       
Query: 61  cacctccatcatcactaccaccacccttaccacctctattatcaccaccatcatcaatca 120
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cacctccatcatc---accaccacccttaccacctctattatcaccaccatcatcaatca 496

                                                                       
Query: 121 ttatcaccaacatcaattatcctagtctcatgtatctataatagccaagggagagagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttatcaccaacatcaattatcctagtctcatgtatctataatagccaagggagagagagg 436

                                                                       
Query: 181 taccatccgcagtgccagcaaggacttgaaatccttggctgcagaaaacccactagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taccatccgcagtgccagcaaggacttgaaatccttggctgcagaaaacccactagtcac 376

                                                         
Query: 241 aacatggtctgctgccatgggacttgataccaacctccaactctgc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aacatggtctgctgccatgggacttgataccaacctccaactctgc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)