BAC Information

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BAC

Clone NameMSMg01-462H07
Chromosome5 (Build37)
Map Location 125,238,631 - 125,431,535
singlet/doubletdoublet
Overlap geneDnahc10, Ccdc92, Zfp664
Upstream geneKntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H07.T7 (MSMg01no462_h07.b1)MSMg01-462H07.TJ (MSMg01no462_h07.g1)
ACCAG547338AG547339
length783741
length of high quality
(start - end)
246 (73 - 318)398 (79 - 476)
definitionCHROMAT_FILE: MSMg01no462_h07.b1 PHD_FILE: MSMg01no462_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005CHROMAT_FILE: MSMg01no462_h07.g1 PHD_FILE: MSMg01no462_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,431,290 - 125,431,535)(125,238,631 - 125,239,028)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAACATCCGCG
GAATCTTAGGATTTCCCATCTTTCCCCCCAGCCCTTCAGTTTTTCCACCA
GTGTGGTGTGAGGCTTTGGGCCAGGAAAGAGCAAAAACTAAAAAGTATCA
CTCGACTTTGGAATGCTGGAGAAATTAATTAAATCCAAATTTGCCCCAGA
ACGTTGAAAGTTGAACACCACTCAAGCCAGACTTGCGATCCGGGCTGGAT
TTCAAAGCAGTTTCTGAGAAACCCCTGGGAGCTTCGTCTGGCCCCATAGC
AGAGATGGAGTTGCATGGTTTATTCCTCAGGGCAGGTGGGAGACCTGTCT
CGAGTCTCAGCGACTCGGGGACAGCTCAGCATGAAGTGAAAACTGGGGAG
AGTTGCTGAGCAACGCACAGCACATGCACTTTGGACCAGGGCCTGGATTT
GCCAGCTAAGCGGTCTCAGTGATGGCTTGGTTCATTTGCAAAGAGCCAAG
CAGAGAAGATATTGCAGGCTTGCTGAGGCAAAGAGGCTTCTGGTGAGTGT
AAGGGAGGGGGGCAATCCACCCATGCTGGGGTCCTACAATGTCCTTCCGT
CTTCTTATACCGGATGATCCTGCCCACTGTAAATACATCTCCCATTTAAT
TTTCCTTTTTTTTTTTATCCACCATGTATTATCCCCTACTCCTTCTTGAT
TCTTGTACTTGGTTAGTTAAGATTTCTTTATCTTAAATATCCTCTCCCTT
TCTATTAAGAATAATCGGCTTTTTCATTTCTTG
TTTTTTCGATTCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTACATTGAACGAGAAA
GGGCCAGGGATGTGGACCACATGGTCCGGTGGTACATGGCTATCGGGCCT
CTACTGACCAAGGTGGAAGGTCTAGTGGTACACACCAACACGGGCAGGGC
CCCGAAGCTAGCTTCCTACTATGAGTACTGGGAAGGCAAGATCTACGACG
TCTTGGTGAAGCTCATACAGAAGTAAGCACACCTGTAGCAGGCCCGGACT
GGTTGCGGGTTATAAGCTGTGATGTACAGCTAAGCACCAGCTGGTTGGGG
AGGCTGGGCAGGGAGTGGGTACCCTCTGTGTGGACTCTTGCTCCTATGAG
GCCCTAATGGCTCACAAAGCCTGCTGTGTGCCTCTCTGCTTCTGGAAATC
AAGGTATCTAAATGTCTGCTTGGCAGCAGAATGCCTGAGTAGAGCTTTTT
CTCATAGTACAGGTGACACTGCCCCTGCTGTCCTCTGCGAGTCTTGTGGN
CCAGTTGCCTTGTTGGTTCTGTGTCTAATCACACTCATACCCTAAAGTTT
TGTAGCCCTCTCTATTAACTTCGCTCCGTGATCTGTCTTTTTTGTACCCT
CTTACTTATCTCTTGCACTTTCTCCGTCTTTCTTTTCATATTTTCCTGCT
CCCTTTCTTTACCCCCCCCAATGTTTCCTTCTTTCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h07.b1 MSMg01no462_h07.b1 CHROMAT_FILE:
MSMg01no462_h07.b1 PHD_FILE: MSMg01no462_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:28 2005
         (246 letters)



>mm_chr5_125431090_125431735
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccccagcccttcagtttttccaccagtgtggtgtgaggctttgggccaggaaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccccccagcccttcagtttttccaccagtgtggtgtgaggctttgggccaggaaagagc 387

                                                                       
Query: 61  aaaaactaaaaagtatcactcgactttggaatgctggagaaattaattaaatccaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaactaaaaagtatcactcgactttggaatgctggagaaattaattaaatccaaattt 327

                                                                       
Query: 121 gccccagaacgttgaaagttgaacaccactcaagccagacttgcgatccgggctggattt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 gccccagaacgttgaaagttgaacgccactcaagccagacttgcgatccgggctggattt 267

                                                                       
Query: 181 caaagcagtttctgagaaacccctgggagcttcgtctggccccatagcagagatggagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaagcagtttctgagaaacccctgggagcttcgtctggccccatagcagagatggagtt 207

                 
Query: 241 gcatgg 246
           ||||||
Sbjct: 206 gcatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no462_h07.g1 MSMg01no462_h07.g1 CHROMAT_FILE:
MSMg01no462_h07.g1 PHD_FILE: MSMg01no462_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:28 2005
         (398 letters)



>mm_chr5_125238431_125239228
          Length = 798

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagtacattgaacgagaaagggccagggatgtggaccacatggtccggtggtacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagtacattgaacgagaaagggccagggatgtggaccacatggtccggtggtacatg 260

                                                                       
Query: 61  gctatcgggcctctactgaccaaggtggaaggtctagtggtacacaccaacacgggcagg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatcgggcctctgctgaccaaggtggaaggtctagtggtacacaccaacacgggcagg 320

                                                                       
Query: 121 gccccgaagctagcttcctactatgagtactgggaaggcaagatctacgacgtcttggtg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccaaagctagcttcctactatgagtactgggaaggcaagatctacgacgtcttggtg 380

                                                                       
Query: 181 aagctcatacagaagtaagcacacctgtagcaggcccggactggttgcgggttataagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctcatacagaagtaagcacacctgtagcaggcccggactggttgcgggttataagct 440

                                                                       
Query: 241 gtgatgtacagctaagcaccagctggttggggaggctgggcagggagtgggtaccctctg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgatggacagctaagcaccagctggttggggaggctgggcagggagtgggtaccctctg 500

                                                                       
Query: 301 tgtggactcttgctcctatgaggccctaatggctcacaaagcctgctgtgtgcctctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggactcttgctcctatgaggccctaatggctcacaaagcctgctgtgtgcctctctg 560

                                                 
Query: 361 cttctggaaatcaaggtatctaaatgtctgcttggcag 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctggaaatcaaggtatctaaatgtctgcttggcag 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)