Query= MSMg01no462_j17.b1 MSMg01no462_j17.b1 CHROMAT_FILE:
MSMg01no462_j17.b1 PHD_FILE: MSMg01no462_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:40 2005
(489 letters)
>mm_chr5_58166610_58167495
Length = 886
Score = 804 bits (416), Expect = 0.0
Identities = 453/470 (96%), Gaps = 9/470 (1%)
Strand = Plus / Minus
Query: 23 tatatacttacattgagacatactttaaaaatccaactacattacaagccatccaaaaag 82
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 686 tatatacttacatcgagacatactttaaaaatccaactacattgcaagccatccaaaaag 627
Query: 83 aataaatcacaaattaaagcacgcatataaattattgtgattcccaaattaaggtgtata 142
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aataaatcacaaattaaaacacgcatataaattattgtgattcccaaattaaggtgtata 567
Query: 143 tacactgtgcgtgtgcacacatgtacatgtgttcatttcttttcttgcatgtttataagt 202
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 566 tacactgtgcgtgtgcacacatgtacatgtgttcatttctttacttgcatgtt------t 513
Query: 203 agtagaagcatgttaactgaattcctcaccacatgtatgccttggatgtaatgttaatgt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agtagaagcatgttaactgaattcctcaccacatgtatgccttggatgtaatgttaatgt 453
Query: 263 tgagatcgctgcttggcgacagcaaagtcttatctttcctctcataaactgtgtatgcct 322
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgagatcgctgcttggtgacagcaaagtcttatctttcctctcataaactgtgtatgcct 393
Query: 323 aagacatttcctcaagtgcagaatacgccttttaacaaatatctaatggctgtaggaaaa 382
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 aagacagttcctcaagtgcagaatacgccttttaacaaatatctaatggctataggaaaa 333
Query: 383 tcgatccacatgttaaatgtatcctgtacataaagttaatcagaataaagtttctctc-- 440
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctatccacatgttaaatgtatcctgtacataaagttaatcagaataaagtttctctcct 273
Query: 441 -cttgtttgttgcttttgtctcatatcaatggtgtcctacatactcagga 489
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcttgtttgttgcttttgtctcatatcaatggtgtcctacatactcagga 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 886
Length adjustment: 10
Effective length of query: 479
Effective length of database: 876
Effective search space: 419604
Effective search space used: 419604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_j17.g1 MSMg01no462_j17.g1 CHROMAT_FILE:
MSMg01no462_j17.g1 PHD_FILE: MSMg01no462_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:40 2005
(475 letters)
>mm_chr5_57965555_57966429
Length = 875
Score = 903 bits (467), Expect = 0.0
Identities = 473/475 (99%)
Strand = Plus / Plus
Query: 1 aaaaatagtatccattcttatgctgcatctaactgtgcttaaatgtggttaaagtaaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aaaaatagtatccattcttatgctgcatctaactgtgcttaaatgtggctaaagtaaaat 260
Query: 61 tcgctgtggcactctctagacatcctgtttcatctctggttacaataaaatcaggctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgctgtggcactctctagacatcctgtttcatctctggttacaataaaatcaggctgag 320
Query: 121 cctcgtttcatttgaaaaaattaaaattaaaaaataaaaggaagaaatacaccttaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcgtttcatttgaaaaaattaaaattaaaaaataaaaggaagaaatacaccttaaggt 380
Query: 181 caaagatagatttgacctcaggttgaaaggatagagaagatattccaagcaaatggacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagatagatttgacctcaggttgaaaggatagagaagatattccaagcaaatggacct 440
Query: 241 aagaagcaggctggtgtagactctctaatatctgaaaaatatacttgaaagcaaaactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaagcaggctggtgtagactctctaatatctgaaaaatatacttgaaagcaaaactaa 500
Query: 301 tcagaagaaataaggaaggattcatcaaaggaaaaaaatccgcgagaggatcttaacatc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcagaagaaataaggaaggattcatcaaaggaaaaaaatccacgagaggatcttaacatc 560
Query: 361 tattccctaaacacaagagaatacaagttcatccaagaaacactgctctattttatatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattccctaaacacaagagaatacaagttcatccaagaaacactgctctattttatatca 620
Query: 421 catatttctttgcacattggtagagacttcaataccacatttcaccaatagctta 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatttctttgcacattggtagagacttcaataccacatttcaccaatagctta 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
