Query= MSMg01no462_j20.b1 MSMg01no462_j20.b1 CHROMAT_FILE:
MSMg01no462_j20.b1 PHD_FILE: MSMg01no462_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:41 2005
(400 letters)
>mm_chr5_130658737_130659536
Length = 800
Score = 750 bits (388), Expect = 0.0
Identities = 397/400 (99%)
Strand = Plus / Plus
Query: 1 cagagtttggaacctatgttattttactaatgctttatgtgtattttattcagtgatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtttggaacctatgttattttactaatgctttatgtgtattttattcagtgatact 260
Query: 61 gtatgtattactaagtacagccttaccattaaagctttctttatttctattttttgtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtattactaagtacagccttaccattaaagctttctttatttctattttttgtctt 320
Query: 121 ttgtagttaaggctgatcttgcacatggaaccttcctgcctcagcttcccaagttctagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtagttaaggctgatcttgcacatggaaccttcctgcctcagcttcccaagttctagt 380
Query: 181 aatataggtgtatctatgatcattgctttttatatcagtgtttttacattggccacataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatataggtgtatctatgatcattgctttttatatcagtgtttttacattggccacataa 440
Query: 241 ttttcttattaaaatattttctagatgtttttacatattgatagtactgtgaggtatttt 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttccaattaaaatattttctagatgtttttacatattgatagtactgtgaggtatttt 500
Query: 301 atacatcttattatcaaagtagttgttagagttccatagatttcgtgtacacatacaggg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 atacatcttattatcaaagtagttgttagagttccatagatttcatgtacacatacaggg 560
Query: 361 cttgtttcttaaacatgggttgttggtgtaagcaggatgg 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtttcttaaacatgggttgttggtgtaagcaggatgg 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_j20.g1 MSMg01no462_j20.g1 CHROMAT_FILE:
MSMg01no462_j20.g1 PHD_FILE: MSMg01no462_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:41 2005
(427 letters)
>mm_chr5_130835224_130836049
Length = 826
Score = 774 bits (400), Expect = 0.0
Identities = 418/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 2 ggaagttggactgcacacacacatcctgccatttcagacccaagcatgtgtttctcagag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggaagttggactgcacacacacatcctgccatttcagacccaagcatgtgtttctcagag 767
Query: 62 tatccttcggcgtctgagaatgggcttgcctcccaaaattggtaacagggagggaaagaa 121
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 766 tatcctccggcgtctgagaatgggcttgcctcccaaagttggtgacagggagggaaagaa 707
Query: 122 acagcaaaacagcccaagagtgaaatactctgttcttgagggtagctggaagaagaccca 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 706 acagcaaaacagcccaagagtgaaatactctgtccttgagggtagctggaagaagaccca 647
Query: 182 tttccaacataggtcacgagtgtttatcccaagacatgaaagtgcctgcagtgggagaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tttccaacataggtcacgagtgtttatcccaagacatgaaagtgcctgcagtgggagaga 587
Query: 242 gaagctggtaagttcagccatggagagaaagcccagtctggaatccagctaactacctca 301
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaagctgg-aagttcagccatggagagaaagcccagtctggaatccagctaactacctca 528
Query: 302 acttccccgatcagttgctgctggatgttgtgagtgcctgactggatgatgtcatggatg 361
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acttccccaatcagttgctgctggatgttgtgagtgcctgactggatgatgtcatggatg 468
Query: 362 ttgtgagtttctgattggatgatgtcatggatgttgtgagtgcctgattggatgatgtca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttgtgagtttctgattggatgatgtcatggatgttgtgagtgcctgattggatgatgtca 408
Query: 422 tcca 425
||||
Sbjct: 407 tcca 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 826
Length adjustment: 9
Effective length of query: 418
Effective length of database: 817
Effective search space: 341506
Effective search space used: 341506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
