BAC Information

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BAC

Clone NameMSMg01-462J21
Chromosome5 (Build37)
Map Location 37,072,183 - 37,254,098
singlet/doubletdoublet
Overlap geneLOC100040278, Cno, Mrfap1, Man2b2
Upstream geneAblim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040825
Downstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462J21.T7 (MSMg01no462_j21.b1)MSMg01-462J21.TJ (MSMg01no462_j21.g1)
ACCAG547462AG547463
length765787
length of high quality
(start - end)		422 (77 - 498)407 (81 - 487)
definitionCHROMAT_FILE: MSMg01no462_j21.b1 PHD_FILE: MSMg01no462_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:41 2005CHROMAT_FILE: MSMg01no462_j21.g1 PHD_FILE: MSMg01no462_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,253,702 - 37,254,098)(37,072,183 - 37,072,589)
sequence
NCCCTTCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCAAACTCCCTTTCCACCGGGTAAAAAAGTAGGTCTGGCT
ATTCCCCAGCCTACAACCCTAGCACTATAGAGGCCAGAGACAAAAGGGCC
AGTGGTGCTTGCTGGCTGCCAGACTGGTTCTAAGTTCTAGGTTCGATGAG
AGATGCTGTCTCAAGAGAATAGAGTTCTGGTCCAGTGTCTCCTCTGGTCT
CTGTAGACACAGGTATGCACACCTGTACACATGTGTGTAGACATGCCACA
TACATAAACCACACTCTCTCGTGTCCTTATGTACACTGAAAGATCAGACA
GACAGACACAGACTTTTACACACCTCCCGGTCATACCCCTTTCCTTCCCT
TCTTCCCAAAGGCAAGCACTGTTTCAAAGCTAATGCTATCTTCATTTCTA
TCCTTTAACATATGTGCATACAGCTGAATCACTTTGAGTAGTTCTAAAGT
GTAAACAAACATCATATTGACTGCCCCATGTTCCGAATGCTTTCTCCCCC
CTCTTCTGGGGACTGTTTCTTTCACCCCAAGGAGGTTTCCCAATAAACCC
CCGGGGAGGAAGAAAACAACCAAGGGGGGGGGCCCTTTAACCTTTTGGAA
AAACCGGGTGGGATATTCTTGCTGGAATTTTATTTCCGGTGGTCCGGGAA
AGGAGGGACTCCTCCCCCCCTTAAATTTTTTTTTCCTAATCCCCCCACTC
TCCTTTCTAAGGGCG

NCCCTCCGAATATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCAATGCTGCCTAGAAA
GCATGAAGTCTCAACATGATGTAGTTCTCCTACTTGTAAACAAGCCTTGC
TTGCTAGCTCCAACCTAAGCACACGCTGTGCCTGGAAGGCATGAAGTGTG
CCCATACATGAAGCAGCTTCACACTCATAAACAAATCTTGTTTGCTATTC
CTGACCTTGGCAAACAATTTGAAGCCAACACTTCTCATTCCTTATAGGAG
GGCCCAGCCTCTAAAGCCTATGTATAACCAAAAGGAGACTGGTGAGGAAT
CTACAACCCAAACTAAAACTAACACTGAAAATAGACAGCAAAGGGCTACA
GCTGATCCTGCTGGCTTGCTTCCTCTATGTATCTGAAAAACTAAATACAA
ATGGACAGTTTTCTAGACATAGTTTTCTGCCCTATTCTAGAAATACATTG
AGTCTTAGGAAATGAATAAAGCTTCTTTTTAAGATAATATAGTTTAAAAA
AAAAAAACCAAACCTAACCTAATATGGGGGCCCAATTCTTTTCATGCCCG
CAAGGAAAAATTGCCTGAAAAATAAAAAACCCCCCTTTTTATTAACCCAA
GAAGTTGAAATCAAACCGGAGGATTTTTTTTATGGAAAAAAAGTTCCTCC
CATTGAAAAATAAAAATATTCTTTTTAATTTAAAGAAGGGGGGTTTTAAA
AAACACATGGAAGTCTATAAAAAATACTTTTAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_j21.b1 MSMg01no462_j21.b1 CHROMAT_FILE:
MSMg01no462_j21.b1 PHD_FILE: MSMg01no462_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:41 2005
         (422 letters)



>mm_chr5_37253353_37254174
          Length = 822

 Score =  644 bits (333), Expect = 0.0
 Identities = 381/397 (95%)
 Strand = Plus / Minus

                                                                       
Query: 26  ttccccagcctacaaccctagcactatagaggccagagacaaaagggccagtggtgcttg 85
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 746 ttccccagcctataaccctagcactatagaggccagagacaagagggccagtggtgcttg 687

                                                                       
Query: 86  ctggctgccagactggttctaagttctaggttcgatgagagatgctgtctcaagagaata 145
           ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 686 ctggctgccaggctggttctaagttctaggttcggtgagagatgctgtctcaagggaata 627

                                                                       
Query: 146 gagttctggtccagtgtctcctctggtctctgtagacacaggtatgcacacctgtacaca 205
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 626 gagttctggtccagtgtctcctctggcctctgtagacacaggtatgcacacctgtacaca 567

                                                                       
Query: 206 tgtgtgtagacatgccacatacataaaccacactctctcgtgtccttatgtacactgaaa 265
            |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 566 cgtgtgtagacatgccacatacacaaaccacactctctcatgtccttatgtacactgaaa 507

                                                                       
Query: 266 gatcagacagacagacacagacttttacacacctcccggtcatacccctttccttccctt 325
           |||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct: 506 gatcagtcagacagacacagatttttacatgcctcccggtcatacccctttccttccctt 447

                                                                       
Query: 326 cttcccaaaggcaagcactgtttcaaagctaatgctatcttcatttctatcctttaacat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttcccaaaggcaagcactgtttcaaagctaatgctatcttcatttctatcctttaacat 387

                                                
Query: 386 atgtgcatacagctgaatcactttgagtagttctaaa 422
           |||||||||| | ||||||| ||||||||||||||||
Sbjct: 386 atgtgcatacggttgaatcattttgagtagttctaaa 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no462_j21.g1 MSMg01no462_j21.g1 CHROMAT_FILE:
MSMg01no462_j21.g1 PHD_FILE: MSMg01no462_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:41 2005
         (407 letters)



>mm_chr5_37071983_37072789
          Length = 807

 Score =  787 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagcaatgctgcctagaaagcatgaagtctcaacatgatgtagttctcctacttgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagcaatgctgcctagaaagcatgaagtctcaacatgatgtagttctcctacttgtaaa 260

                                                                       
Query: 61  caagccttgcttgctagctccaacctaagcacacgctgtgcctggaaggcatgaagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagccttgcttgctagctccaacctaagcacacgctgtgcctggaaggcatgaagtgtg 320

                                                                       
Query: 121 cccatacatgaagcagcttcacactcataaacaaatcttgtttgctattcctgaccttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccatacatgaagcagcttcacactcataaacaaatcttgtttgctattcctgaccttgg 380

                                                                       
Query: 181 caaacaatttgaagccaacacttctcattccttataggagggcccagcctctaaagccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacaatttgaagccaacacttctcattccttataggagggcccagcctctaaagccta 440

                                                                       
Query: 241 tgtataaccaaaaggagactggtgaggaatctacaacccaaactaaaactaacactgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtataaccaaaaggagactggtgaggaatctacaacccaaactaaaactaacactgaaa 500

                                                                       
Query: 301 atagacagcaaagggctacagctgatcctgctggcttgcttcctctatgtatctgaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagacagcaaagggctacagctgatcctgctggcttgcttcctctatgtatctgaaaaa 560

                                                          
Query: 361 ctaaatacaaatggacagttttctagacatagttttctgccctattc 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaatacaaatggacagttttctagacatagttttctgccctattc 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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