Query= MSMg01no462_k19.b1 MSMg01no462_k19.b1 CHROMAT_FILE:
MSMg01no462_k19.b1 PHD_FILE: MSMg01no462_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:45 2005
(402 letters)
>mm_chr5_115054994_115055795
Length = 802
Score = 727 bits (376), Expect = 0.0
Identities = 394/402 (98%), Gaps = 6/402 (1%)
Strand = Plus / Minus
Query: 4 gaattcctggttctgccgcccagatgtgtggcagtacccaggcctgaatcacggagggca 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaattcctggttctg-tgcccagatgtgtggcagtacccaggcctgaatcacggagggca 544
Query: 64 ggctgtgctttgtgaggtatatatactgggtcgagcgagagagcgccattagacagaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggctgtgctttgtgaggtatatatactgggtcgagcgagagagcgccattagacagaaac 484
Query: 124 gcagggtgagactggagggtcagggaagggacctgctcaggagcctggagctgcagacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcagggtgagactggagggtcagggaagggacctgctcaggagcctggagctgcagacag 424
Query: 184 cagcttagaactgggtcctccccaggtggccaggccccttctgattcatggtatatgtcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagcttagaactgggtcctccccaggtggccaggccccttctgattcatggtatatgtcc 364
Query: 244 ctggagcagtagttccggggacctcagattttt---gttacagagtggggctgtcctctt 300
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 363 ctggagcagtagttccggggacctcaga--tttcagggtacagagtggggctgtcctctt 306
Query: 301 cccacaggaggggagggctggcagccattcctttcctcctcagcatcaggaagtcccagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccacaggaggggagggctggcagccattcctttcctcctcagcatcaggaagtcccagg 246
Query: 361 gcattctaagctgagatgggagggagtgtgtgtgtgtgtgtg 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcattctaagctgagatgggagggagtgtgtgtgtgtgtgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_k19.g1 MSMg01no462_k19.g1 CHROMAT_FILE:
MSMg01no462_k19.g1 PHD_FILE: MSMg01no462_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:46 2005
(347 letters)
>mm_chr5_114825362_114826108
Length = 747
Score = 600 bits (310), Expect = e-176
Identities = 337/346 (97%)
Strand = Plus / Plus
Query: 1 agattaactcgcttctgtgagctaggaccttactcctgctcctactatttcccacgggga 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 agattaactcgcttctgtgagctaggaccttactccttctcctactatttcccacgggga 260
Query: 61 aagagtccctgagtgcaggcaacggccggatgaggaagcaggttcagaaaaaggggcaac 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagtccctgagtgcaggcaatggccggatgaggaagcaggttcagaaaaaggggcaac 320
Query: 121 ttcctgccctagcatcaccagactacaagatcctacagcagtccaggcagcacaccagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctgccctagcatcaccagactacaagatcctacagcagtccaggcagcacaccagac 380
Query: 181 ctgaggtactgagaccaggggtatgtagcacctggtccttatgtacttcaggatgaatcc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaggtactgagaccaggggtacgtagcacctggtccttatgtacttcaggatgaatcc 440
Query: 241 attttattctagagcctgagatgtccagaggcgggctggatctgacccctgaatacaggg 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 atcagattctagagcctgagatgtccagaggcgggctggatctgacccttgaatacaggg 500
Query: 301 caagaacaagaacggaaggagggagggagggagggagagagagaga 346
||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 501 caagaacaagaacggaaggagggagggagagagagagagagagaga 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
