BAC Information

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BAC

Clone NameMSMg01-462L14
Chromosome5 (Build37)
Map Location 151,941,254 - 151,941,725
singlet/doubletsinglet
Overlap geneStard13
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462L14.T7 (MSMg01no462_l14.b1)MSMg01-462L14.TJ (MSMg01no462_l14.g1)
ACCAG547544AG547545
length758751
length of high quality
(start - end)
473 (73 - 545)242 (78 - 319)
definitionCHROMAT_FILE: MSMg01no462_l14.b1 PHD_FILE: MSMg01no462_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:50 2005CHROMAT_FILE: MSMg01no462_l14.g1 PHD_FILE: MSMg01no462_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTAATACTCGTGTCACNTATAGACTCACTATATTTCGNAAATCCGCG
GAATTCTCTGAATTTCTCTGTCATGCTTTCCAATATGGCTACATTGAATA
AGTCTTTCTCTGTCTCTCTGTCTCTCTCTCTTTCTCCTCCTCCTCCTCCT
CCTCCTTTCTTTTTTTAATTGGCTTACTGAGAACAGGTGGCTGAACCTGT
CTTGGGGCACAGCTTGCAAACCCCAATGCTCCTCCTCCCTCCCAAGTTTG
ATGACTCTATGAAGGACTAAGATGGGCCATGTTCTACCGCCAGTCTTTGG
TGAACATACGGAGAAGTATGTTCTCATTGTGTTAGCTGCTAAGATTTGGG
ACTAATTTGTTACTGAACCATAACTTGGCCTGTCATAATAGAAAATATAA
AAAGATAGAACTGTTTCCAAGATCTAAGTCAGAGGGAAAAAAATATGATG
GCATCTGCTAAACCTAGAAAACCTAAAGCATTATCTCCACCCCATGAGCA
AACAATATTATTCATCTTTGTTTCCATCCATGGTTTCTAGGTTACATTCA
GACAACTGGTCCACCAACATCCTCCGCTTTAGGACTATATATGCTACCGT
ATATAACCATTATTGTTTCTCCCTACCCTGTAACTCAAATAGACTTTGGA
TTACACCCATCTAATTCCCCCGAGAAATATTGGGGCGTTTACCTAGTCTA
TGGGGCGTTCCCTCTTTGTGTTCACCCGTTCCTATAAACTTCTTGGACCC
CATTTTAA
NTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATAATCTCTCCATCTCAAGAT
ATTGAACGCCAAGCCACACCAGTGTGGCAAAACTCTGCTAATTGAGGTTG
AAGTCCATCATTGACCAGACAGCCTCTGAGCTAATGGGACTCCCTTCATT
AGCACGGCTTCTCCTTTTCTGACCCTTTGTCTGGGGAATTCTAAGCCCAC
ACATATGCCTCTACCTGAGTTAGATTACAGGGCTAACTTCCTTTCTCCTG
ATAAGAGACCATTCAGCTATTTTTTGAGATTTCTGAAATGCTTCCGAATG
CTAATGAGGTATTTTAGTACCTTAAGCCCTCAGCCAATGAGTGACCTTTG
CCCATCCTGGATGTTCCTACCCTCAGTTCCCTAAAGCTTTATAAACCTTG
AATCACCCAAAGTGAAATTGATCTGCCCCCTGATAGCCAGTCTGGGTGTG
ACATTCACCATACATACTCAAAGGGCTTCCAAAACTCCCTGTCCCTCCTC
ACTGCTCCCTTTGCCCACATGGACCATATTGGCAGATGATCCACGAGGGT
GGTAAGGACCACACACCAGCAAGGTCCTCTATGTCACGCTCCCTGGTTCC
AGTTTTTAGGCATAGTCACCAATGTGCCTGCTATTCCTAATAAGCACAAC
GTTAAATACTTTTCCCGGCGGTAACCCTGTTTTGTTTAAAAGTTTTTCCA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_l14.b1 MSMg01no462_l14.b1 CHROMAT_FILE:
MSMg01no462_l14.b1 PHD_FILE: MSMg01no462_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:50 2005
         (473 letters)



>mm_chr5_151941203_151942075
          Length = 873

 Score =  876 bits (453), Expect = 0.0
 Identities = 468/473 (98%), Gaps = 1/473 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctttccaatatggctacattgaataagtctttctctgtctctctgtctctctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgctttccaatatggctacattgaataagtctttctctgtctctctgtctctctctctt 464

                                                                       
Query: 61  tctcctcctcctcctcctcctcctttctttttttaattggcttactgagaacaggtggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctcctcctcctcctcctcctcctttctttttttaattggcttactgagaacaggtggct 404

                                                                       
Query: 121 gaacctgtcttggggcacagcttgcaaaccccaatgctcctcctccctcccaagtttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaacctgtcttggggcacagcttgcaaaccccaatgctcctcctccctcccaagtttgat 344

                                                                       
Query: 181 gactctatgaaggactaagatgggccatgttctaccgccagtctttggtgaacatacgga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacactatgaaggactaagatgggccatgttctaccgccagtctttggtgaacatacgga 284

                                                                       
Query: 241 gaagtatgttctcattgtgttagctgctaagatttgggactaatttgttactgaaccata 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaagtatgctctcattgtgttagctgctaagatttgggactaatttgttactgaaccata 224

                                                                       
Query: 301 acttggcctgtcataatagaaaatataaaaagatagaactgtttccaagatctaagtcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 acttggcctgtcataatagaaaatataaaaagatagaactgtttccaagatctaagtcag 164

                                                                       
Query: 361 agggaaaaaaatatgatggcatctgctaaacctagaaaacctaaagcattatctccaccc 420
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 163 aggg-aaaaaatatgatggcatctgcaaaacctagaaaacctaaagcattatctccaccc 105

                                                                
Query: 421 catgagcaaacaatattattcatctttgtttccatccatggtttctaggttac 473
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 104 catgagcaaacaatattattcatctttgtttccatccatggtgtctaggttac 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)