Query= MSMg01no462_m02.b1 MSMg01no462_m02.b1 CHROMAT_FILE:
MSMg01no462_m02.b1 PHD_FILE: MSMg01no462_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
(574 letters)
>mm_chr5_17205228_17206202
Length = 975
Score = 978 bits (506), Expect = 0.0
Identities = 548/568 (96%), Gaps = 11/568 (1%)
Strand = Plus / Plus
Query: 8 ttctttgtaagttacaaaaagtctcataggttatctagact-gcctaaaatatgcactga 66
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 208 ttctttgtaaggtagaaaaagtctcataggttatctagacttgcctaaaatatgcactga 267
Query: 67 ttaccattgtgttaagtaaataaattaatattaacctttctgagatatcttattattaca 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttaccattgtgtaaagtaaataaattaatattaacctttctgagatatcttattattaca 327
Query: 127 atgatgcttgcttttcccaggcacatgaataattttatttaaccatcaaattttttctct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgatgcttgcttttcccaggcacatgaataattttatttaaccatcaaattttttctct 387
Query: 187 gaggaagtataagaatataagctccattgagctggaaagataacttggccctcaaaggct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaggaagtataagaatataagctccattgagctggaaagataacttggccctcaaaggct 447
Query: 247 agtctcaaaacccaaacctgaagatagactttgtgggttcaggtgacttgatttggtata 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtctcaaaacccaaacctgaagatagactttgtgggttcaggtgacttgatttggtata 507
Query: 307 tttattattgaacaccaagttactggactgatatatcaggaaaagtagctgccttatagg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tttattattgaacaccaagttactggactgatatatcaggaaaagtagctgccttatagg 567
Query: 367 aattactttggtgagtgagaaaatgaattttgtgtatcatccaacattaggtcagacatc 426
|||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 568 aattactttggtgagtgagaaaatgagttttgtgtat----------taggtcagacatc 617
Query: 427 attctaggtcatgtaaaattatttctgtgtgggctgcaacagattcagaatacaaacacc 486
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 618 attctaggtcatgtaaaattatttctgtgttggctgcaacagattcagaatacaaatacc 677
Query: 487 tggtgactcgtttcacattctagacatttaccttcaagttcctattttggttagcataga 546
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 678 tggtgactaatttcacattctagacatttaccttcaagttcctattttgtttagcataga 737
Query: 547 ctatttacatttctcttttactaaagtt 574
||||||||||||||||||||||||||||
Sbjct: 738 ctatttacatttctcttttactaaagtt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_m02.g1 MSMg01no462_m02.g1 CHROMAT_FILE:
MSMg01no462_m02.g1 PHD_FILE: MSMg01no462_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
(496 letters)
>mm_chr5_17378619_17379514
Length = 896
Score = 944 bits (488), Expect = 0.0
Identities = 494/496 (99%)
Strand = Plus / Minus
Query: 1 agaggcaggttttccaagcagagcagagcaactaagtcagaggccaagagaagccagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agaggcaggttttccaagcagagcagagcaactaagtcagaggccaagagaagccagttt 674
Query: 61 gtattagtcctcttgaagagggagtttgagacagaatggctgagttgaagcagccaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtattagtcctcttgaagagggagtttgagacagaatggctgagttgaagcagccaacct 614
Query: 121 gagttcagaaagaaccagaaagggtgatcttattcaataggaagcctccagatgataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gagttcagaaagaaccagaaagggtgatcttattcaataggaagcctccagatgataatg 554
Query: 181 gcatctggtgaataaaagttacatttacaatggagcagtagacccctaaccaagacacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcatctggtgaataaaagttacatttacaatggagcagtagacccctaaccaagacacaa 494
Query: 241 tgggtatattacaaattattcatagtctagcacagactccctatttgcttacttgtgatt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 493 tgggtatattacaaattattcatagtctagcacagactccctattcgcttacttgtgatt 434
Query: 301 ttactgatgagaaacagctgactacctaggcaaatggatggacctggagggcatcatcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttactgatgagaaacagctgactacctaggcaaatggatggacctggagggcatcatcct 374
Query: 361 gagtgaggtaacccaatcacaaaggaactcacacaacatgtacttactgataagtggata 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 gagtgaggtaacccaatcacaaaggaactcacacaacatgtactcactgataagtggata 314
Query: 421 ttagcccagaaacttaggatacccaagatataagatacgatttgcaaaacacatgaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttagcccagaaacttaggatacccaagatataagatacgatttgcaaaacacatgaaact 254
Query: 481 caagagaacgaagacc 496
||||||||||||||||
Sbjct: 253 caagagaacgaagacc 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
