BAC Information

Click to search

BAC

Clone NameMSMg01-463E14
Chromosome5 (Build37)
Map Location 83,714,694 - 83,736,343
singlet/doubletdoublet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463E14.T7 (MSMg01no463_e14.b1)MSMg01-463E14.TJ (MSMg01no463_e14.g1)
ACCAG547974AG547975
length722745
length of high quality
(start - end)		346 (54 - 399)598 (81 - 678)
definitionCHROMAT_FILE: MSMg01no463_e14.b1 PHD_FILE: MSMg01no463_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:38 2005CHROMAT_FILE: MSMg01no463_e14.g1 PHD_FILE: MSMg01no463_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,736,002 - 83,736,343)(83,714,694 - 83,715,291)
sequence
NNNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGATATCTCTACTAGAGAATTATACTTATTTGAGA
AAAAAATTCATCTAAGCAACAAAGAGGGATCTAGAAATTGGTTAGCATTC
TGAAATCAGCCTTATGATTCACACACTCTTTTGCCCTAAACAGATCAGTC
TAATAAATGCTTAAAAAAGACATTGCAACCACACCTACTTTGTGTCCTCT
AAATTGTATAATGGACATCTTTTATCCTGTGTGACATTTATATACATTTA
TAAAATATTCAAATGCATATGGACAATCAGCCATTTTGTAGAGTCAGTAG
AAATTGTTAGATATAGCAAAATGAAATTACAGTTTGACTTGCGTCTTACA
TGAAATATCGGTGGNTCACAGTAATGAAAACATTTTCTTCTTCCACTAAA
TGAACTGGGATGGAAGGCTTTAAAAAATTCAACCTAATTTTTTCCCCCAC
CACAAAACCTGGGGATCTCAAAAAAAAAGAAAATTTTTCCCCCACTTTTT
TTGGGGGGCACCCACCCCCCCCCCCCCCCTCGGGGGGGGGAGGGGGGGGA
AAAAAACCCCCTCAAAAAATTTCTTTTTGTGTTTTCTCCTTAANCCCAAA
AATATTATAAATATTGGGTGGGCGCGCCCCCCCCTGGGGGGGGGGGGCGC
CTTTTTTATTTTTTTTTTTTCC

NNNGGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATACATTACCTTGGTAT
TAAGTAGCTTAAATATTTAAACAATGATATTCTCATAGTAGTTGCTGATT
TTAGTTTAAATCATTACTATGTCTATTTGTATGGTTTGTTAAAAATTATT
TCTTTTCATTTAAACAAATATAAACTTTATTAATTTTACTTTATAGTTTT
CCAACTTCAGATTATTAAAAAATGCTTTGTTTACATGGATAAGCTAAATT
GAATTTTAACCACTGTTTTCTTGATTAGGTACATATAGCTATATGGTTAT
TACTAATATAAGTTTTTTCAGTTGATTTGAGATGGGATTAAAACAACAAA
TAACCTTCTCTTGAATTTAAACTTGGTCTTTTCTTTTAAAAAAAAGGAAG
TATGAAATCATATGTATTGATTCTCATACTAATCATGCTGAAGATGAAGC
TACAGGATATTTTTTTTTATTTTTGCTACATTAGTGCATACAAAATTTCT
CTGGACTTTCTGGCTTACTACATCAAGGCCCAGCTCTCTGCCTTTATTAC
AAGCTGTGAGTATGATTCTATGCATCCTCTTGCCTAACCACGCACATGCT
TTTTATGCTTGAGGTATTTCTATGCTTTTAAAAGCAAACAGCACTAGATA
CAAACAGCTCCCTTTTTCAAGACTACTTGCATTTTATCATAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_e14.b1 MSMg01no463_e14.b1 CHROMAT_FILE:
MSMg01no463_e14.b1 PHD_FILE: MSMg01no463_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:38 2005
         (346 letters)



>mm_chr5_83735798_83736543
          Length = 746

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgatatctctactagagaattatacttatttgagaaaaaaattcatctaagc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattctttgatatctatactagagaattatacttatttgagaaaaaaattcatctaagc 487

                                                                       
Query: 65  aacaaagagggatctagaaattggttagcattctgaaatcagccttatgattcacacact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aacaaagagggatctagaaattggttagcattctgaaatcagccttatgattcacacact 427

                                                                       
Query: 125 cttttgccctaaacagatcagtctaataaatgcttaaaaaagacattgcaaccacaccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttttgccctaaacagatcagtctaataaatgcttaaaaaagacattgcaaccacaccta 367

                                                                       
Query: 185 ctttgtgtcctctaaattgtataatggacatcttttatcctgtgtgacatttatatacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctttgtgtcctctaaattgtataatggacatcttttatcctgtgtgacatttatatacat 307

                                                                       
Query: 245 ttataaaatattcaaatgcatatggacaatcagccattttgtagagtcagtagaaattgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttataaaatattcaaatgcatatggacaatcagccattttgtagagtcagtagaaattgt 247

                                                     
Query: 305 tagatatagcaaaatgaaattacagtttgacttgcgtcttac 346
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagatatagcaaaatgaaattacagtttgacttgcgtcttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_e14.g1 MSMg01no463_e14.g1 CHROMAT_FILE:
MSMg01no463_e14.g1 PHD_FILE: MSMg01no463_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:38 2005
         (598 letters)



>mm_chr5_83714494_83715491
          Length = 998

 Score = 1125 bits (582), Expect = 0.0
 Identities = 594/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatacattaccttggtattaagtagcttaaatatttaaacaatgatattctcatagta 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatacattgccttggtattaagtagcttaaatatttaaacaatgatattctcatagta 260

                                                                       
Query: 61  gttgctgattttagtttaaatcattactatgtctatttgtatggtttgttaaaaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgctgattttagtttaaatcattactatgtctatttgtatggtttgttaaaaattatt 320

                                                                       
Query: 121 tcttttcatttaaacaaatataaactttattaattttactttatagttttccaacttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttcatttaaacaaatataaactttattaattttactttatagttttccaacttcag 380

                                                                       
Query: 181 attattaaaaaatgctttgtttacatggataagctaaattgaattttaaccactgttttc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatttaaaaatgctttgtttacatggataagctaaattgaattttaaccactgttttc 440

                                                                       
Query: 241 ttgattaggtacatatagctatatggttattactaatataagttttttcagttgatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ttgattaggtacatatagctatatggttattactaatataagttttttcaggtgatttga 500

                                                                       
Query: 301 gatgggattaaaacaacaaataaccttctcttgaatttaaacttggtcttttcttttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgggattaaaacaacaaataaccttctcttgaatttaaacttggtcttttcttttaaa 560

                                                                       
Query: 361 aaaaaggaagtatgaaatcatatgtattgattctcatactaatcatgctgaagatgaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaggaagtatgaaatcatatgtattgattctcatactaatcatgctgaagatgaagc 620

                                                                       
Query: 421 tacaggatatttttttttatttttgctacattagtgcatacaaaatttctctggactttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaggatatttttttttatttttgctacattagtgcatacaaaatttctctggactttc 680

                                                                       
Query: 481 tggcttactacatcaaggcccagctctctgcctttattacaagctgtgagtatgattcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcttactacatcaaggcccagctctctgcctttattacaagctgtgagtatgattcta 740

                                                                     
Query: 541 tgcatcctcttgcctaaccacgcacatgctttttatgcttgaggtatttctatgcttt 598
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 tgcatcctcttgcctaaccacgcacatgctttttatgcttgaggtacttctatgcttt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |