Query= MSMg01no463_f01.b1 MSMg01no463_f01.b1 CHROMAT_FILE:
MSMg01no463_f01.b1 PHD_FILE: MSMg01no463_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:40 2005
(436 letters)
>mm_chr5_122491660_122492496
Length = 837
Score = 721 bits (373), Expect = 0.0
Identities = 420/445 (94%), Gaps = 17/445 (3%)
Strand = Plus / Plus
Query: 1 tccgtcacctatgctaaagccagagtcctacaagacacggccttgcagccctgagcagca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 tccgtcacctatgctaaagccagagtcctacaaggcacggccttgcagccctgagcagca 254
Query: 61 gcaaactactgacatgcccacctgcctcacgcaagaaagcagttgcccaaagacacacgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 gcaaactactgacatgcccacctgcctcacgcaagaaagcagttgcccaaggacacacgg 314
Query: 121 gttgtgagcgaatagctgggatttgaaccctggcagcgccatgtacggtcacaagattaa 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttgtgagcgaatagctgggacttgaaccctggcagcgccatgtacggtcacaagattaa 374
Query: 181 aaagggggtgggg-------tggggaaatcgagttaactgtttaaaaaaataaagttgtc 233
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaagggggtgggggtgggggtggggaaatcgagttaactgtttaaaaaaataaagttgtc 434
Query: 234 aaggcttttctggtgttggacagttggtaaagctgtcctcctctggttctgtgttattta 293
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 aaggcttttctggtgttgaacagttggtaaaactgtcctcctctggttctgtgttattta 494
Query: 294 catgtgtgtgcatgtgtgcgtgtgt--ctgtctgtctgtgtgtctgtgtatctgcgngct 351
|||||||||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct: 495 catgtgtgtgcatgtgtgtgtgtgtgtctgtctgtctgtgtgtctgtgt--------gct 546
Query: 352 ctctgcccactggcgcctttgcacaccctgttcccactttagtgagtggtcactgcccgt 411
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctctgcccagtggggcctttgcacaccctgttcccactttagtgagtggtcactgcccgt 606
Query: 412 ggcctttggattcccccttgaagac 436
|||||||||||||||||||||||||
Sbjct: 607 ggcctttggattcccccttgaagac 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_f01.g1 MSMg01no463_f01.g1 CHROMAT_FILE:
MSMg01no463_f01.g1 PHD_FILE: MSMg01no463_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:40 2005
(243 letters)
>mm_chr5_122667730_122668372
Length = 643
Score = 447 bits (231), Expect = e-130
Identities = 240/243 (98%)
Strand = Plus / Minus
Query: 1 tgtgagccgatgaggtgccccaccccctcctctacacacctggcttccaagccccgcaga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtgagccgatggggtgccccaccccctcctctacacacctggcttccaagccccgcaga 384
Query: 61 tgggccaggagtgtgtgtccatctgtggaatgaggctagcaggtaggccacacctcttgc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 tgggccaggagtgtgtgtccatctgtggaatgaggctagcaggtgggccacacctcttgc 324
Query: 121 ttgtcctatcatggtgttaccagcctttgagaaatggtagctatccccaggtgccctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgtcctatcatggtgttaccagcctttgagaaatggtagctatccccaggtgccctgct 264
Query: 181 aatgccactacaaggcataatcctcactgcacctctgtaggctgccatttcccagaatgg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatgccactaccaggcataatcctcactgcacctctgtaggctgccatttcccagaatgg 204
Query: 241 aaa 243
|||
Sbjct: 203 aaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
