Query= MSMg01no463_n14.b1 MSMg01no463_n14.b1 CHROMAT_FILE:
MSMg01no463_n14.b1 PHD_FILE: MSMg01no463_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:25 2005
(581 letters)
>mm_chr5_100570330_100571310
Length = 981
Score = 984 bits (509), Expect = 0.0
Identities = 566/599 (94%), Gaps = 27/599 (4%)
Strand = Plus / Minus
Query: 5 gaattccaggagagtctccc---gctatacaaagaaaccctgtcttga----------aa 51
||||||||||| || || ||||||||||||||||||||||||| ||
Sbjct: 818 gaattccaggacag----ccagggctatacaaagaaaccctgtcttgaaaaacaaaacaa 763
Query: 52 aacaaaacaaaacaaaacaaacaaacaaacaaaaaaaccaacgagttttgttagagaata 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aacaaaacaaaacaaaacaaacaaacaaacaaaaaaaccaacgagttttgttagagaata 703
Query: 112 caaataaaagataaaccatgaagggcaggatgggtccactgggggttggggtagaaaaac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caaataaaagataaaccatgaagggcaggatgggtccactgggggttggggtagaaaaac 643
Query: 172 atctaatgccaggcagggtctttgttccttgttgattttattccaggagtacagaattgc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atctaatgccaggcagggtctttgttccttgttgattttattccaggagtacagaattgc 583
Query: 232 tctcctctggcgggtggcatgggtctggggcgtgagagcagattatgatatgcttatcca 291
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 582 tctcctctggcgggtggcatgggtctggggcgtgagagcagattaggagatgcttatcca 523
Query: 292 aggatcatttgattccacctgagtcagctggggtggctcccgggagcttgaagctcaaga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggatcatttgattccacctgagtcagctggggtggctcccgggagcttgaagctcaaga 463
Query: 352 tgtgtccaacacaggaaggaaaagcaactaactgcattgtcagttctgctctgagccacc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgtgtccaacacaggaaggaaaagcaactaactgcattgtcagttctgctctgagccacc 403
Query: 412 accgttagccccccacctccatcagcccatcttccactttgtcatgagccgccactgcaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 accgttagccccccacctccatcagcccatcttccactttgtcatgagccgccactgcaa 343
Query: 472 ggtcccctagtatcagctcatcttctgcttcgtcattggctgcacaatgcctgtacaact 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 342 ggtcccctagtatcagctcatcttctgcttcgtcattggctgcacaatgcctgtacatct 283
Query: 532 tggt-cattt--------cctgagaggccagcaccagccatggaggccaacatttgaaa 581
|| | ||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 282 tg-tacatctgcacaatgcctgagaggccagcaccagccatggaggccaacattagaaa 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_n14.g1 MSMg01no463_n14.g1 CHROMAT_FILE:
MSMg01no463_n14.g1 PHD_FILE: MSMg01no463_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:25 2005
(507 letters)
>mm_chr5_100377154_100378060
Length = 907
Score = 905 bits (468), Expect = 0.0
Identities = 499/518 (96%), Gaps = 16/518 (3%)
Strand = Plus / Plus
Query: 1 tgtactgactgactcagtgtaaaggtttctcggtgacctgtcagaagcctgcccgccgct 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtactgactgactcaatgtaaaggtttctcggtgacctgtcagaagcctgcccgccgct 260
Query: 61 gtttttactggagttctgggtagtttctgccattaggatggaacaaacagagagatagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttttactggagttctgggtagtttctgccattaggatggaacaaacagagagatagac 320
Query: 121 agatccagaaaacaaaaggctcaacattaactagatgaggcgcattctcaggacactggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatccagaaaacaaaaggctcaacattaactagatgaggcgcattctcaggacactggt 380
Query: 181 aaagtaagggtccaagattcaaacctcgtcagccatggtggtgcacacctttaatcctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aaagtaagggtccaagattcaaacctcgtcagccatggtggtgcacacctttaatcccag 440
Query: 241 cacttggttttt-----agaggcagaccaatctctgtgagattgaggccatctagaacta 295
||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 cacttgg-----gagaaagaggcagaccaatctctgtgagattgaggccatcaagaacta 495
Query: 296 catagtgaggttcaagccagccagagctacacagggagaccctgtcttgacaacaacaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catagtgaggttcaagccagccagagctacacagggagaccctgtcttgacaacaacaac 555
Query: 356 aacaacaaca------tgtatagcaaattagccagccaaactagattggggcaggtcaaa 409
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacaacaacaacaacatgtatagcaaattagccagccaaactagattggggcaggtcaaa 615
Query: 410 agactgttaatgggccagtgagatggctcaggcagtaaagacatccccactatgcatgac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agactgttaatgggccagtgagatggctcaggcagtaaagacatccccactatgcatgac 675
Query: 470 aagtaacatttgatctctggaacccacagagcaggaga 507
||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aagtaacatttgatctctggaacccacagagcaggaga 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
