Query= MSMg01no464_f05.b1 MSMg01no464_f05.b1 CHROMAT_FILE:
MSMg01no464_f05.b1 PHD_FILE: MSMg01no464_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:03 2005
(519 letters)
>mm_chr5_113453512_113454430
Length = 919
Score = 895 bits (463), Expect = 0.0
Identities = 503/517 (97%), Gaps = 4/517 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgatctc--tgcctcccatgacatcacagtcctaaaagaccccatatcacacc 62
|||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 719 gaattcttga-c-caatgcctcccatgacatcacagtcctaaaagaccctatatcacacc 662
Query: 63 cttgtgagatcctggaaagtggatcctgctgaaccccacctaaactcaagatgtaagctg 122
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 661 cttgtgagatcctggaaaatggattctgctgaaccccacctaaactcaagatgtaagctg 602
Query: 123 tgtgaagctgtcaagagggtaggcatactgccacacagcaggaactaacccaacagcaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgtgaagctgtcaagagggtaggcatactgccacacagcaggaactaacccaacagcaaa 542
Query: 183 cacatctggagccaagtggccccagcaaggtaaggtctcctccagagccttccccagatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cacatctggagccaagtggccccagcaaggtaaggtctcctccagagccttccccagatg 482
Query: 243 aggtcaggatgggacctctgggaactggtgtattgtggatgagtctctctgagatagcag 302
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 481 aggtcaggatgggacctctgggaactggtggacagcggatgagtctctctgagatagcag 422
Query: 303 cctccagctaacatctgtgttacagttccacatctcaggaaaccactttcttgcttgctt 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctccagttaacatctgtgttacagttccacatctcaggaaaccactttcttgcttgctt 362
Query: 363 gttgggtgctgagtgtgatcagggcggtcctggctcctgctcctgagtgggtgtccggtt 422
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 361 gttgggtgctgagtgtgatcagggcggtcctggctcctgctcccaagtgggtgtccggtt 302
Query: 423 atagctgtagcaatgtttctaggataaggaaagtcctggtcatgtgctctgtgcccacat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atagctgtagcaatgtttctaggataaggaaagtcctggtcatgtgctctgtgcccacat 242
Query: 483 ggcagccacaggagcaggcagccaaggtgagaggcca 519
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcagccacaggagcaggcagccaaggtgagaggcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_f05.g1 MSMg01no464_f05.g1 CHROMAT_FILE:
MSMg01no464_f05.g1 PHD_FILE: MSMg01no464_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:03 2005
(478 letters)
>mm_chr5_113282085_113282964
Length = 880
Score = 594 bits (307), Expect = e-174
Identities = 344/357 (96%), Gaps = 2/357 (0%)
Strand = Plus / Plus
Query: 1 aatatgctcagaaaatgcagaataaatcctcgcctgtggcccagaataggcctactgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgctcagaaaatgcagaataaatcctcgcctgtggcccagaataggcctactgcac 260
Query: 61 agctgctgggccagaagccaagccaccagctgggacagggcggacaggcacagatttggc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agctgctgggccagaagccaagccaccagctgggacagggcggacaggcgcagatttggc 320
Query: 121 cttaagaagcacgtgggatgagggggacagggaggagctgggcctcaggagccctgggcc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaagaagcacgtgggaagagggggacagggaggagctgggcctcaggagccctgggcc 380
Query: 181 cgaggacagaga--tggaattacccccttccctagtcacatgacagcccacagctgtcca 238
|||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cgaggacagagagatggaattgcccccttccctagtcacatgacagctcacagctgtcca 440
Query: 239 tctattttgtcaggaaagggctttgagtgggaactcagacttggcgtcacatggagaaag 298
|||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaccgtgccagcaaagggctttgggtgggaactcagacttggcgtcacatggagaaag 500
Query: 299 aggatgaaacagctatgcggaccctgctcacgacaactccacagcctggagcagagc 355
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 aggatgaaacagctatgcggaccctgctcacgacaactccacagcctggaacagagc 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 880
Length adjustment: 10
Effective length of query: 468
Effective length of database: 870
Effective search space: 407160
Effective search space used: 407160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
