BAC Information

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BAC

Clone NameMSMg01-464G01
Chromosome5 (Build37)
Map Location 48,092,520 - 48,283,334
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040865
Downstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464G01.T7 (MSMg01no464_g01.b1)MSMg01-464G01.TJ (MSMg01no464_g01.g1)
ACCAG548807AG548808
length791741
length of high quality
(start - end)
116 (88 - 203)454 (79 - 532)
definitionCHROMAT_FILE: MSMg01no464_g01.b1 PHD_FILE: MSMg01no464_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:07 2005CHROMAT_FILE: MSMg01no464_g01.g1 PHD_FILE: MSMg01no464_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(48,092,520 - 48,092,635)(48,282,889 - 48,283,334)
sequence
CCCCTTTCCCCGNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
AGAGAATCCGCGGAATTCAGNCAACTTTTCTCAGAGATCACAACTGTAAA
GAAAATTGATTCTCCCTCTCTAAGCTAATATCAAATGCCAGTAGTTTCTC
TGGTAGGCATGGGATTTTCATCACTACCCCTCCCCTATATCCATCCTCAG
CTTTCGTAGATCTTGAGAAAGTCTTGTGCATACTGTCACAGTCACTGTGA
GGTCATGTAATATGTTTTATGGCATACTGGAATTCTGGAAAAAAACCTGG
CGGCCCTTACCGGACACCCCATCACCTTCTGGACCCCTTTTTTTTTTTTT
TAAACCCCCCTTTTCCTTTATCCCTGTTGTCGCTTGGTATTTCTTTTTCT
TCTTCTCCCTCCCTATTATAATTCCCTGTCATCCCCTCCTTTCTGTTCAC
TATTTTTGTGTCCAACTATTCCTCCTCTGCTCTTCTTCCATAGCATCCCC
TTTTTTCCCTCTTTTTCCGTATTTCCGCGTTTTTTTCTAGCCCCTCCCCT
CCTTATCCATCTCCCCCTCTCCGTTTTCATTGTACGTCTTCCTTTCTTTT
TTCCTAACCTTTTTATTTGATCCCCCCTTTCCCCTTCTTATTTACTTTCC
CCAATTTTCCCCTTCCTTTTTTTTTTGTGCTCTAACCCCTTTCCCTTTTG
TACTTATCCATTATGCCCCATCATCTTCATTCCCCTCTTTCTTTCATTTT
TTTTCCTTCCCCTATCCCCTTCATCCCTACCTCTCCGTCGN
NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCAACTCTTCTCCATAATT
TTGTTGCTGTCCATTAATCATTGAGTTGGAAGATGAAAAATCTAACTGGA
AAAACCCCTCTCTTAATATTCTATTAGTTTTCATGTTTACTTCTCTCAGA
AATACACTCTTTGACAGCTCTAGAAATAATACTTAATAAATCAGATTATC
CCATAGTTCAGTCAAGTTGAGATATAGGATTATCCAATATAAGATCAGCT
TTTCTCAACTTAGCACTCTTATTTATTTTCTCAGGCAATATTTACTGTCT
AATGAGGAAAATATTATGTTTTTAAAGTTTTACTAAATTGAAATAAATAT
TCCAGATGAGAAATTAGTCTTCCAGTGGTATTTAGTCTTTATTTTTACAT
TCTGTAATTTAAATATTATGACTTAAAATTAAAAGCACATAAATAATTTA
TTTATCTCATTCTACATGTCATTAGAATAAGATGACATAGAAGTGTCTGT
TATCCATAATCTCATGGCAAGAATCACAATGGATGTAACATAGAATCAGC
TTTGATGTCTATCATCCGATGATTGGATCAAGCCAATGCGGCATCTATAG
GAATAGTAATCTCTTCGTCCTCTCAAAGAAATTACATAACCCCTTTCCTT
ACTTAGTTATAACGTATCGTTTAGTATTTGTCCATCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_g01.b1 MSMg01no464_g01.b1 CHROMAT_FILE:
MSMg01no464_g01.b1 PHD_FILE: MSMg01no464_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:07 2005
         (116 letters)



>mm_chr5_48092320_48092835
          Length = 516

 Score =  224 bits (116), Expect = 1e-63
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaactgtaaagaaaattgattctccctctctaagctaatatcaaatgccagtagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaactgtaaagaaaattgattctccctctctaagctaatatcaaatgccagtagttt 260

                                                                   
Query: 61  ctctggtaggcatgggattttcatcactacccctcccctatatccatcctcagctt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggtaggcatgggattttcatcactacccctcccctatatccatcctcagctt 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no464_g01.g1 MSMg01no464_g01.g1 CHROMAT_FILE:
MSMg01no464_g01.g1 PHD_FILE: MSMg01no464_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:08 2005
         (454 letters)



>mm_chr5_48282481_48283334
          Length = 854

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttctccataattttgttgctgtccattaatcattgagttggaagatgaaaaatctaac 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tcttctccataattttgttgctgtccattaatcattgagttggaagatgaaaaatctaac 795

                                                                       
Query: 69  tggaaaaacccctctcttaatattctattagttttcatgtttacttctctcagaaataca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggaaaaacccctctcttaatattctattagttttcatgtttacttctctcagaaataca 735

                                                                       
Query: 129 ctctttgacagctctagaaataatacttaataaatcagattatcccatagttcagtcaag 188
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 734 ctctttgacagctctagaaataatacttaataaatctgattatcccatagctcagtcaag 675

                                                                       
Query: 189 ttgagatataggattatccaatataagatcagcttttctcaacttagcactcttatttat 248
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 674 ttgagatatgggattatccaatataagatcagcttttctcaacttagcactcttacatat 615

                                                                       
Query: 249 tttctcaggcaatatttactgtctaatgaggaaaatattatgtttttaaagttttactaa 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tttctcaggcaatatttactgtctaatgaggaaaatattatgtttttaaagttttactaa 555

                                                                       
Query: 309 attgaaataaatattccagatgagaaattagtcttccagtggtatttagtctttattttt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attgaaataaatattccagatgagaaattagtcttccagtggtatttagtctttattttt 495

                                                                       
Query: 369 acattctgtaatttaaatattatgacttaaaattaaaagcacataaataatttatttatc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acattctgtaatttaaatattatgacttaaaattaaaagcacataaataatttatttatc 435

                                     
Query: 429 tcattctacatgtcattagaataaga 454
           ||||||||||||||||||||||||||
Sbjct: 434 tcattctacatgtcattagaataaga 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)