BAC Information

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BAC

Clone NameMSMg01-464L13
Chromosome5 (Build37)
Map Location 137,255,919 - 137,256,337
singlet/doubletsinglet
Overlap geneEmid2
Upstream geneMdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L13.T7 (MSMg01no464_l13.b1)MSMg01-464L13.TJ (MSMg01no464_l13.g1)
ACCAG549069AG549070
length816775
length of high quality
(start - end)
39 (77 - 115)419 (76 - 494)
definitionCHROMAT_FILE: MSMg01no464_l13.b1 PHD_FILE: MSMg01no464_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:35 2005CHROMAT_FILE: MSMg01no464_l13.g1 PHD_FILE: MSMg01no464_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCTAAATTAGCGTCGCNAAANGAANCCCCAATCGTTACTGTCCGNGGN
AANCACNANATGACTTCACCCGCCGGGAACACAAAGAAATCCTCCTGCCT
CAGCCTCTTAAATGCTCTCACCGCTAGGACTACAAGTGTATGACACCACA
TGGCGGAGGTAATGATGTTTTGGCTTTTTGTTTGTTTGTTTGTTTGTTTG
CTTGTTTGTTTTCGAGACTGTTTCTCTCTGTGTACCCCTGCCTTTTTTTT
TCTCACTTCCTCTACTGGTCTGGCCCCTTTCCCCCCTCCCTGAATCGAAC
CCCCCACACTTTTTCCTCCTTTACAGAACAACAGCAACCCCACCCACGAG
ACACAATTTTTTTTTTTCCCCCCCCCCTCTCTCCTTTTCTTCCATACACC
CATACTTACCCCTCTCCTTTTCCCATCCATTTTTTTTCTTTTCCCACTAC
TCCCTACCATTACCCCTTTTCATTTTTGCTTTCCACCCTCTATTTCCCCC
GCTCTCACTCCTTTTCCACATCACTCCTCCTCCCCCTCTTCCATTTCCCC
CCCTTTCTCCCCCCCCTCTTCATTTCCCCCCTGCATATCCGACCTTCTCC
TTATTTCTTCTCCCCATCCCCCCCCCCTTATATTCCCTTTTTCTTCACAT
TCTTCCACCTCCCCCCATCTCAAACAATACCCCATTCTACCGCCCCCTTT
TTTTTTTTTTTCTCCCCCTATTTCCTTCCATAATCACTCCTCTCCTTTCT
ACTCTTCCTCTCCATTCTTCCTTACATACTCATCTCCCCCCCCTTTTTTT
CTATCCCTATTTCTTT
ACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCTACAGGAGGAGTGGATCAT
GGGAAAGCACTTTTCGAAACGTTGTAACTTGCTTGGTAATTTTAACGATT
CGTTCCTGCTAGACTGTAAATGGCTAGAGGGGAGAAGAGGGGTCAGGATT
TCCACCCTTTGTCGGCCACTATTCAAATTCGATAAACCAGACTTTCGACA
CATCAGTTACTCCTAACCAGTGGAAGGTCTTCACCATGGTGAATTGTCCT
TATCATGGACATAGTAACTGAGGATCCAGGAGTTAAGGAAGTTGGTTTTC
AACCTTCCTTCCTGATCAGTTTGGCCAGAGCAGGATCCAGGGGGATTGAG
TTAAAAACTGTTGGGCACCCAGGGAAGATGCTACACAAAGGCCTTTGTTG
TTCAAATGTGGTGCTTAAGTTTATCCATTTCGTTTATGGGGCGGTGGGGG
GGCTTTTTTTTTCTCTTTATTCCCCTTTCCTTCTTTCCTTTTTTTTCCCC
CTTTTTTTTTTTCCTCTTTCTTCTTCTCTTCTTTTCTTCCTCTTCCTTCT
CGCTCACTCCGCTCTCTACTTCCCTTCTTTTCTTTCCCTCCTCCCTTCTT
TCATTTTTTTTTTCTCCTTTCATCCTCTTTTTTCTTTTCCCATCCCCCTA
CCCTTCACTTTCTTCCCCTTTTATGCCTATTACCTCCTTTTTGTTTCCTC
AACTTTTAACTTGCTGTCTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l13.g1 MSMg01no464_l13.g1 CHROMAT_FILE:
MSMg01no464_l13.g1 PHD_FILE: MSMg01no464_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:35 2005
         (419 letters)



>mm_chr5_137255719_137256537
          Length = 819

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagctacaggaggagtggatcatgggaaagcacttttcgaaacgttgtaacttgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccagctacaggaggagtggatcatgggaaagcacttttcgaaacgttgtaacttgcttg 560

                                                                       
Query: 61  gtaattttaacgattcgttcctgctagactgtaaatggctagaggggagaagaggggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtaattttaacgattcgttcctgctagactgtaaatggctagaggggagaagaggggtca 500

                                                                       
Query: 121 ggatttccaccctttgtcggccactattcaaattcgataaaccagactttcgacacatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggatttccaccctttgtcggccactattcaaattcgataaaccagactttcgacacatca 440

                                                                       
Query: 181 gttactcctaaccagtggaaggtcttcaccatggtgaattgtccttatcatggacatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttactcctaaccagtggaaggtcttcaccatggtgaattgtccttatcatggacatagt 380

                                                                       
Query: 241 aactgaggatccaggagttaaggaagttggttttcaaccttccttcctgatcagtttggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aactgaggatccaggagttaaggaagttggttttcaaccttccttcctgatcagtttggc 320

                                                                       
Query: 301 cagagcaggatccagggggattgagttaaaaactgttgggcacccagggaagatgctaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagagcaggatccagggggattgagttaaaaactgttgggcacccagggaagatgctaca 260

                                                                      
Query: 361 caaaggcctttgttgttcaaatgtggtgcttaagtttatccatttcgtttatggggcgg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaaggcctttgttgttcaaatgtggtgcttaagtttatccatttcgtttatggggcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)