BAC Information

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BAC

Clone NameMSMg01-464N08
Chromosome5 (Build37)
Map Location 33,295,365 - 33,295,609
singlet/doubletsinglet
Overlap geneDepdc5
Upstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141
Downstream geneYwhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464N08.T7 (MSMg01no464_n08.b1)MSMg01-464N08.TJ (MSMg01no464_n08.g1)
ACCAG549155AG549156
length763778
length of high quality
(start - end)
243 (76 - 318)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no464_n08.b1 PHD_FILE: MSMg01no464_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:43 2005CHROMAT_FILE: MSMg01no464_n08.g1 PHD_FILE: MSMg01no464_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACAAATCCGC
GGAATTCTTGGTATTGCGACAACGGGAAGTCCTTTCGTTATGCAATTGGC
TTATGAGAATGCTAATGCAATTTGCCGAGCTGCGATTCAACCGCATAAGG
GAACGACAGATTTGGCGGGATATGTCCGCCTTTGCGCAGACATCGGGCCT
TCCTGCGAGACCTTGCAGGGAACCCACGCGCAGGCAATGTTCTCAAGGAT
ATGAGGGAAAAATGTATGCTTTAAGTGTGGAGGTTTAGATCATTTTAGAA
TTGATTGTCCTCAGAATTGGTTGTTGAGGTTAGACAAACAGGCCGTGGCC
CAGGAATATGTCCCCGGTGTGGAAAGGGCCGCCACTGGGCGAAAGATTGT
AAGCATAAAACGAGGGTTTTGAGCCGCCCGGTGCCGGGAAACGAGGAAAG
GGGTCAGCCTCAGGCCCCGAGTTACTCAAAGAAGACAGCTTATGGGGCTA
TAAATCTGCTGCCCAGTCCACAAGATCAGTTCTCTGAGCTTGTTAGGTCA
CACCCAGGAAATGTAAGACTGGACCTCTGTTTCACTGTCCATGTAGCATT
ATCCCCTTAAGTGCGAGTTCAAACTCTGCCTACCGGAGTTTTTTGCACCA
TTTTCTTGTTATACCTGCCGGTTTTCCCCTACGATTACCCCATCTCCTCG
GTTTACCCCCTTTATAATATCCCCGTGCTTTTTACCCCGGATCTTTCCGC
TCCTTTTTATCTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTTCAACACCTGTGGGAA
TGGGAAGAAACAAGATTGGGCACTATACTGTCACATACCCAGTGGCAGCC
TCGGGTACTATGTGAGCACTGGAACTAGAAGGTGCAGCTTTCAGAGGTAA
CCTGGGTTTTGACAACACAGCATTCATCGACTATGGCTATTCAGGGGAGG
GTCGTGAGCTTAAGCCACTGCTCTGCAGTTGGATCTGTCCCTGCTACTTA
TATAATATATATGTGCCCTTTTGTCCGTTGAAAATAGCCTAAGAATTTGG
CTGTGAAGTATCCATTGCAGCAGTATAATGGATTCTCTTTGTCTGTGGAT
AATGTATTTGTAGATTCCCTCATCCACTGATCTGAAATGAAATATGAGGC
TGGCAAGATGGCTCAGTGGCTATTGCTGCCAAGCCTGATGACCTGCATTC
CCCAGAATCAATATGGCATAAGGAGAGAGCTAGCTCCTGGAGATTGTTTT
CTGAGCCCGAACATGAGTGCTGTGCCCTGAAGCCCCCCCTACGCTACTCA
ACTATCTTGCTCTATATTTACCTACTTCCTCCATTTCACCGGATTAACCT
TCCCATATTTTTTTTTTCGCCTGGTGGACAAGGGCCCTATGGCCCATTAT
ATTTTCACCTGCTCTTTCTTTAATGTTCACGCACCCTTTCACCCCCTGTT
ACCCCCTTGTGAGCATTCTTCACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_n08.g1 MSMg01no464_n08.g1 CHROMAT_FILE:
MSMg01no464_n08.g1 PHD_FILE: MSMg01no464_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:43 2005
         (241 letters)



>mm_chr5_33295165_33295810
          Length = 646

 Score =  416 bits (215), Expect = e-121
 Identities = 236/245 (96%), Gaps = 5/245 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggttcaacacctgtgggaa----tgggaagaaacaagattgggcactatactgtcac 56
           ||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||
Sbjct: 201 ttaggttcaacacctgtgggaaggaatgggaagaaacaatattgggcactatactgtcac 260

                                                                       
Query: 57  atacccagtggcagcctcggg-tactatgtgagcactggaactagaaggtgcagctttca 115
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacccagtggcagcctcggggtactatgtgagcactggaactagaaggtgcagctttca 320

                                                                       
Query: 116 gaggtaacctgggttttgacaacacagcattcatcgactatggctattcaggggagggtc 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gaggtaacctgggttttgacaacacagcattcatcgactatggctattcaggggagggcc 380

                                                                       
Query: 176 gtgagcttaagccactgctctgcagttggatctgtccctgctacttatataatatatatg 235
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gtgagcttaagccactgctctgtagttggatctgtccctgccacttatataatatatatg 440

                
Query: 236 tgccc 240
           |||||
Sbjct: 441 tgccc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 646
Length adjustment: 9
Effective length of query: 232
Effective length of database: 637
Effective search space:   147784
Effective search space used:   147784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)