BAC Information

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BAC

Clone NameMSMg01-464O16
Chromosome5 (Build37)
Map Location 61,207,216 - 61,207,437
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464O16.T7 (MSMg01no464_o16.b1)MSMg01-464O16.TJ (MSMg01no464_o16.g1)
ACCAG549219AG549220
length754786
length of high quality
(start - end)
235 (83 - 317)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no464_o16.b1 PHD_FILE: MSMg01no464_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:49 2005CHROMAT_FILE: MSMg01no464_o16.g1 PHD_FILE: MSMg01no464_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAGCAGCGGCNG
GATTCACCACCATTGCTTAAGACGGTGNTTGNTTGTTTATTTATCTTTTA
TTGGCTATCTTCTTTATTTACATTTTAAATGTTGTCCCCTTTCCAGGTCT
CCCCTCCGGAAACCTCCTATCCTCTCCCCATTCTCATGCCTCTATGAGGG
TGCTCTCCCACTCACCCACCCACTCCAGCCTTCCTGCCCTGGCATTCCCC
TACACTGGGGCATCAATTCCCCACAGGCACCAGGTCTGCTCCTCCCACTA
ATGTCCAACAAGGCCATTTTTTTGTACATCCCCAGCCAGAGCCCTGGGTA
CTGTTTGTACCTCAATGTGTACTCTTTAGCTGGTGGTCCAGTCTCCAGGA
GCTCTGATAAATCTGGTCAGCTGACCCTGTTGCTCCTCACAAGGGCTGCA
ATCCCCCTGAGCTCCTTCAGTCCCTTCTCCATCTCCTCCATTGGGGACCC
CACACTACGTACTATTCTTTAGGTTTCCAATATACTCTATGTATTACTCT
ATTCATTTAGCGACATTCTTTTGAGTATAGATCCTATAATCTCATATGAT
TAGATCCTAATCACCCTTCTTGTTGAAAATCCTTCCTTCCCTATCCCTGT
TCTCCTTTCCTCTCATCCTCTTGTTCGTACTATATTCTTTCGCACTTACT
ATCTCTCCTGCCTCCCTTACGCCTTTTTTTCTGCTTTTCCCACCCCCTTG
CCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTATGTAACTAACTGTTCTAT
GTCTTAGGAAGCCTCAATGGGAGAATATTTGCCTGTATTCAATACAAAAG
TTTTTGTCCTTTAAATATTTTCCATAATTTGGCAGGTTGTCTACAGCCAT
GTTTTAGGGAAAAAAAATCTGAGTTTGGACAATTGTGTTATATCTGTTTT
CTTCAACCTTCATTTATATATATATATATATATATATATATATATATATA
TATATATATATGAAATATTATTTATATGTATATATATATATAGCGCGCCC
ACACTCTTTTTTTTTTTTTCTCATACACGCGTGTATACAGTGTGTGTGTG
TGTGATAAAGATACATCCCCCACACTCATATTTTTTTTTGCAGACACATA
TATATCCCCTCTGCGCGTGACTCAGACACATAAAAGATAGATAGAGATAG
ACCTTTGTGCGTGCGCCTTTATATATACTATATTACATATCTACACGTCT
GTGTGCTTTGCTTCTCTTATTTTTTCTTTTCTCTGTTCTCTTCTCTTTTC
ACTTACATATACTCTCCCTATTTTCTCCCTTCCTCCTCTCATTCTTCTTT
CTCCCACTTTTTCTTCTTTCTCTCCCCTTTTTTCCCTTTTCCCTTCCTAT
TTCTTCTCTTTCCTGCTATCTTCTTTTCTTTTCTCTCTTTTTTTCCTCCT
TCCCCCTCTTTCTTCCTCTTTTTTTCTCTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_o16.g1 MSMg01no464_o16.g1 CHROMAT_FILE:
MSMg01no464_o16.g1 PHD_FILE: MSMg01no464_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:50 2005
         (240 letters)



>mm_chr5_61207016_61207654
          Length = 639

 Score =  360 bits (186), Expect = e-104
 Identities = 214/224 (95%), Gaps = 5/224 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctatgtaactaactgttctatgtcttaggaagcctcaatgggagaatatttgcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctatgtaactaactgttctatgtcttaggaagcctcaatgggagaatatttgcctgt 260

                                                                       
Query: 61  attcaatacaaaagtttttgtcctttaaatattttccataatttggcaggttgtctacag 120
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 attcaatacaaaaggttttgtcctttaaatattttccataattttgcaggttgtctacag 320

                                                                       
Query: 121 ccatgttttagggaaaaaaaatctgagtttggacaattgtgttatatctgttttcttcaa 180
            ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tcatgttttagggaaaaaaa-tctgagtttggacaattgtgttatatttgttttcttcaa 379

                                                       
Query: 181 ccttcatttatatatatatat-a--tatatatatatatatatat 221
           ||||||||||||||||||||| |  ||| ||||||||| |||||
Sbjct: 380 ccttcatttatatatatatatgaactat-tatatatatgtatat 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 639
Length adjustment: 9
Effective length of query: 231
Effective length of database: 630
Effective search space:   145530
Effective search space used:   145530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)