BAC Information

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BAC

Clone NameMSMg01-465E22
Chromosome5 (Build37)
Map Location 102,470,500 - 102,470,742
singlet/doubletsinglet
Overlap geneWdfy3
Upstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneEG666515, EG666527, LOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465E22.T7 (MSMg01no465_e22.b1)MSMg01-465E22.TJ (MSMg01no465_e22.g1)
ACCAG549518AG549519
length7561,251
length of high quality
(start - end)
244 (68 - 311)---
definitionCHROMAT_FILE: MSMg01no465_e22.b1 PHD_FILE: MSMg01no465_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:22 2005CHROMAT_FILE: MSMg01no465_e22.g1 PHD_FILE: MSMg01no465_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGGGCCGCGGAATTCC
AAGGTTTCCAGAATGGATGGGAATATTAACTGCCATGAAGAGAACATGGC
TTTCCCTAGTTGACCCAGCTCTCAGGGATGAAGCAGGGTTGAAACCTGGC
TCTTCTGAATCCCAGCTCCGCAGACATCATGTGTCTCAAGGATCCCATCC
CTCACTCCTTTATGAAGAGCTTTATGAAGACCTACAACTGACCTGACGCT
GTGTGCTGGGCTGGCATGAATCTGCAGAGACAGGAATGGCAGGCACTTTC
TTCCTGAAGCATATGTCTAGAAGTGTTACACCTGCGAGGCGAGAAAGAAA
GGGCGAGATTTAGTTTGTGTTCAGCATTCCGGCCGACCCAGCACCCTCTC
TGCTTCCTTAACACCTTAGAACACACCACTCAGGCAGGTGAACTGCTTTA
AAAACCATCTATGATAGGGCTAAAGAGATGGTTCAATGGTTAAGAGCCCA
GGCTACTCTTCCAGAGGTCCTGACTTCAATTTCCAGCGACCACATGGGGG
CTCACAGCCACCTGTTATGGGACCTGACACCCTCTTCTGGTGTGCTTGAA
GAAAGCTAACAGGGACTCCATAATACAAAAATAATAAACCCTTAAAAAAA
AAAACCCAACCGGGGAAAAGGGGGGCCACAAAAGGTCCAGTGGGAAAGGG
TTTGCCCCAACCTGAAAACCCCCTTGTTTTAACCCGTGAACCTCTCTTTA
TAAAAA
ACCCCGGTGTGCGGGCGCCGCGAGCAGGTTAGCTCCCGGAGAGAGCGGGC
GGGAGGCGGCGGTTCAACGTTTCGTTTCGTACGGAGCATCTACTCACGCA
TCCACGCGCGTGTACGACTTAGACCCGGCCAGCCGAAGCGATGACCAACC
TGTCAGGCGATTGTACGCCGCGCGCGCCCGCGGCGTACACGCGGAATATA
TCTACGACACATAGACAGTGTCTCTTACCCACCGCTACCCCGGCACCTAC
AATACCGTCGGCACCCGCGAACCCGCACGCAATATGACAATAACGCCAGT
TGAGAATGCAGACGCTCCCACGATCTATACGGCGCGCGTCCACCGTTCCT
TTCATACCGCGGGAGAGACTAACTGGATGAGCGGGAATGAAACTAAGCAA
GAACAAGTGGCGCGAGAGTTGGTGTAGATAGTTACGTTGTGTATAGAGGA
AAGAAGCGCGCCGCATGGAGAGACTGGCACATACAACACTTACTCAATAA
TACCGACAACCGCGCACGAGTCACTCGACTCCGCTTACACACAGACAAAT
CATATATTAGCGACACGTTATACGGGATAGGACGACGGTGGTGACTGGTG
GACGTACACGTACACTGACGACGACGCACTATGTGTTGAGACTCGACTAA
TCTTACATCGGTGCATCCCTGGCGACTTATTGCTATCCATTATACGAGAG
AGATTGCGCGAATATGGAATAAAGCATAGAAGCTAGCTCGGCGGAGTGGA
GTGAGGTATGTATAACACACGACACGGTGTGTTAACGTAAACAGTAGAAG
TGTGAGAGATGCTATAGGCGATAAGCGGTGCAGACGGTATGGTAGCGTCA
CGTGTACGTAAGCAGATATCAGACGCCCGGCCGACACAGCTATGTGTGGC
TGGCGCGATAAGATTAACACTTCGCCTATGACCAACCTTGTGCGATTGCT
AGTGATGTCGCCGCGCCACGCCGCAGGCGCACATACCATATGAGATAAGA
TAGAAACGACGCAGTACGCTTTGGTGATATCAGCGAGACACCACGCTCAC
AGCGTTGATTCTGATGTACGCACCGTCGACGTACGAAATATATGCGCCAC
GCAGTGCCTGAGATACAAGCGGAGGCAGAGACGTGAGGAGAATAACGCGC
GTAAGACGTAAATAATGTCCACTGCGCGCGGCTTCGTATCTTATGACAGC
TCTAAGACGGCGCGGTTGCGATCACTGAGTCAAAGGAGCAGAGAACACCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_e22.b1 MSMg01no465_e22.b1 CHROMAT_FILE:
MSMg01no465_e22.b1 PHD_FILE: MSMg01no465_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:22 2005
         (244 letters)



>mm_chr5_102470300_102470942
          Length = 643

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaatattaactgccatgaagagaacatggctttccctagttgacccagctctcaggg 60
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaatattaa-taccatgaagagaacatggctttccctagttgacccagctctcaggg 259

                                                                       
Query: 61  atgaagcagggttgaaacctggctcttctgaatcccagctccgcagacatcatgtgtctc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgaagcaggattgaaacctggctcttctgaatcccagctccgcagacatcatgtgtctc 319

                                                                       
Query: 121 aaggatcccatccctcactcctttatgaagagctttatgaagacctacaactgacctgac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggatcccaaccctcactcctttatgaagagctttatgaagacctacaactgacctgac 379

                                                                       
Query: 181 gctgtgtgctgggctggcatgaatctgcagagacaggaatggcaggcactttcttcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctgtgtgctgggctggcatgaatctgcagagacaggaatggcaggcactttcttcctga 439

               
Query: 241 agca 244
           ||||
Sbjct: 440 agca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)