MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-465F10
Chromosome	5 (Build37)
Map Location	65,142,229 - 65,142,516
singlet/doublet	singlet
Overlap gene	none
Upstream gene	3110047P20Rik, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
Downstream gene	Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	3110047P20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319807 MGI:1920464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs, 3 Proteins

name	0610040J01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76261 MGI:1923511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AA536743 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100532 MGI:2140767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041636 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041636
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100041646 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pgm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66681 MGI:97564
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbc1d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57915 MGI:1889508
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps22 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:595140
definition	note : peptidylprolyl isomerase A pseudogene 22 pseudo : _no_value

name	LOC433894 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042198 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Klf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16599 MGI:1342773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21897 MGI:1341295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21899 MGI:1341296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130005N14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68303 MGI:1915553
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem156 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243025 MGI:2685292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Klhl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71778 MGI:1919028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213081 MGI:2443231
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19687 MGI:97891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Klb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83379 MGI:1932466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20005 MGI:1298373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lias (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:79464 MGI:1934604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ugdh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22235 MGI:1306785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110003E01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68552 MGI:1915802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930589O11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78214 MGI:1925464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs

name	Hip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53323 MGI:1858216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030416H16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71521 MGI:1918771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3110047P20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253931 GeneID:319807 MGI:1920464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 30 ESTs, 3 Proteins product : RIKEN cDNA 3110047P20 gene transcript_id : XM_132047.7

name	0610040J01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803576 GeneID:76261 MGI:1923511
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610040J01 gene transcript_id : NM_029554.3

name	AA536743 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348252 GeneID:100532 MGI:2140767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AA536743 transcript_id : NM_145923.4

name	LOC100041646 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253904 GeneID:100041646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041646 transcript_id : XM_001476747.1

name	Pgm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130267 GeneID:66681 MGI:97564
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoglucomutase 1 transcript_id : NM_025700.2

name	Tbc1d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120587002 GeneID:57915 MGI:1889508
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 1 transcript_id : NM_019636.2

name	LOC433894 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253935 GeneID:433894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC433894 transcript_id : XM_001478331.1

name	LOC100042198 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253937 GeneID:100042198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042198 transcript_id : XM_001478341.1

name	Klf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802499 GeneID:16599 MGI:1342773
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kruppel-like factor 3 (basic) transcript_id : NM_008453.3

name	Tlr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13507602 GeneID:21897 MGI:1341295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 1 transcript_id : NM_030682.1

name	Tlr6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58743328 GeneID:21899 MGI:1341296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 6 transcript_id : NM_011604.2

name	9130005N14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560127 GeneID:68303 MGI:1915553
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9130005N14 gene transcript_id : NM_026667.2

name	Tmem156 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253910 GeneID:243025 MGI:2685292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : transmembrane protein 156 transcript_id : XM_144292.7

name	Klhl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892613 GeneID:71778 MGI:1919028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kelch-like 5 (Drosophila) transcript_id : NM_175174.3

name	Wdr19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23510248 GeneID:213081 MGI:2443231
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 19 transcript_id : NM_153391.1

name	Rfc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755305 GeneID:19687 MGI:97891
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : replication factor C (activator 1) 1 transcript_id : NM_011258.1

name	Klb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130737 GeneID:83379 MGI:1932466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : klotho beta transcript_id : NM_031180.2

name	Rpl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14149646 GeneID:20005 MGI:1298373
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein L9 transcript_id : NM_011292.1

name	Lias (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376612 GeneID:79464 MGI:1934604
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipoic acid synthetase transcript_id : NM_024471.3

name	Ugdh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981926 GeneID:22235 MGI:1306785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucose dehydrogenase transcript_id : NM_009466.2

name	1110003E01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801855 GeneID:68552 MGI:1915802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110003E01 gene transcript_id : NM_133697.3

name	4930589O11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253941 GeneID:78214 MGI:1925464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 16 ESTs product : RIKEN cDNA 4930589O11 gene transcript_id : XM_899432.3

name	Hip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118601007 GeneID:53323 MGI:1858216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : huntingtin interacting protein 2 transcript_id : NM_016786.3

name	9030416H16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486764 GeneID:71521 MGI:1918771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9030416H16 gene transcript_id : NM_001081321.1

name	3110047P20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253932 GeneID:319807 MGI:1920464
definition	codon_start : 1 product : hypothetical protein LOC319807 protein_id : XP_132047.6

name	0610040J01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981329 GeneID:76261 MGI:1923511
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC76261 protein_id : NP_083830.2

name	AA536743 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625912 GeneID:100532 MGI:2140767
definition	codon_start : 1 product : hypothetical protein LOC100532 protein_id : NP_666035.2

name	LOC100041646 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253905 GeneID:100041646
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476797.1

name	Pgm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859686 CCDS:CCDS19300.1 GeneID:66681 MGI:97564
definition	GO_function : GO:0004614 - phosphoglucomutase activity [Evidence IDA] codon_start : 1 note : phosphoglucomutase 2 product : phosphoglucomutase 1 protein_id : NP_079976.1

name	Tbc1d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120587003 GeneID:57915 MGI:1889508
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 note : tre-2/USP6, BUB2, cdc16) domain family, member 1 product : TBC1 domain family, member 1 protein_id : NP_062610.2

name	LOC433894 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253936 GeneID:433894
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478381.1

name	LOC100042198 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253938 GeneID:100042198
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478391.1

name	Klf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680582 CCDS:CCDS19301.1 GeneID:16599 MGI:1342773
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : Kruppel-like factor 3 product : Kruppel-like factor 3 (basic) protein_id : NP_032479.1

name	Tlr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507603 CCDS:CCDS19302.1 GeneID:21897 MGI:1341295
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] [Evidence NAS]; GO:0045335 - phagocytic vesicle [Evidence NAS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] [Evidence NAS]; GO:0042497 - triacylated lipoprotein binding [Evidence NAS] GO_process : GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence NAS]; GO:0042495 - detection of triacylated bacterial lipoprotein [Evidence NAS]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0042116 - macrophage activation [Evidence NAS]; GO:0002217 - physiological defense response [Evidence IMP]; GO:0045410 - positive regulation of interleukin-6 biosynthesis [Evidence IMP]; GO:0042535 - positive regulation of tumor necrosis factor-alpha biosynthesis [Evidence IMP] codon_start : 1 product : toll-like receptor 1 protein_id : NP_109607.1

name	Tlr6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58743329 CCDS:CCDS19303.1 GeneID:21899 MGI:1341296
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 exception : mismatches in translation product : toll-like receptor 6 protein_id : NP_035734.2

name	9130005N14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560128 CCDS:CCDS19304.1 GeneID:68303 MGI:1915553
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68303 protein_id : NP_080943.2

name	Tmem156 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253911 GeneID:243025 MGI:2685292
definition	codon_start : 1 product : hypothetical protein protein_id : XP_144292.6

name	Klhl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30039720 CCDS:CCDS19305.1 GeneID:71778 MGI:1919028
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : kelch-like 5 protein_id : NP_780383.1

name	Wdr19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510249 GeneID:213081 MGI:2443231
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : WD repeat membrane protein PWDMP protein_id : NP_700440.1

name	Rfc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755306 GeneID:19687 MGI:97891
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : replication factor C, 140 kDa product : replication factor C 1 protein_id : NP_035388.1

name	Klb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13626032 CCDS:CCDS19306.1 GeneID:83379 MGI:1932466
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015926 - glucosidase activity [Evidence IEA] codon_start : 1 product : klotho beta protein_id : NP_112457.1

name	Rpl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14149647 GeneID:20005 MGI:1298373
definition	GO_component : GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 product : ribosomal protein L9 protein_id : NP_035422.1

name	Lias (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13277380 CCDS:CCDS19307.1 GeneID:79464 MGI:1934604
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:0017140 - lipoic acid synthase activity [Evidence IPI]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0009107 - lipoate biosynthesis [Evidence IEA]; GO:0009105 - lipoic acid biosynthesis [Evidence IGI] codon_start : 1 product : lipoic acid synthetase protein_id : NP_077791.1

name	Ugdh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678499 CCDS:CCDS19308.1 GeneID:22235 MGI:1306785
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP] codon_start : 1 product : UDP-glucose dehydrogenase protein_id : NP_033492.1

name	1110003E01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526868 CCDS:CCDS19309.1 GeneID:68552 MGI:1915802
definition	codon_start : 1 product : hypothetical protein LOC68552 protein_id : NP_598458.1

name	4930589O11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82897580 GeneID:78214 MGI:1925464
definition	codon_start : 1 product : hypothetical protein LOC78214 protein_id : XP_904525.1

name	Hip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542956 GeneID:53323 MGI:1858216
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence TAS]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : huntingtin interacting protein 2 protein_id : NP_058066.2

name	9030416H16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486765 GeneID:71521 MGI:1918771
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC71521 protein_id : NP_001074790.1

name	LOC100041636 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041636
definition	number : 2 pseudo : _no_value

name	LOC100041636 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041636
definition	number : 1 pseudo : _no_value

clone name	MSMg01-534J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-526F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-157L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193F07
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-465F10.T7 (MSMg01no465_f10.b1)	MSMg01-465F10.TJ (MSMg01no465_f10.g1)
ACC	AG549542	AG549543
length	798	771
length of high quality (start - end)	383 (63 - 445)	288 (67 - 354)
definition	CHROMAT_FILE: MSMg01no465_f10.b1 PHD_FILE: MSMg01no465_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:24 2005	CHROMAT_FILE: MSMg01no465_f10.g1 PHD_FILE: MSMg01no465_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:24 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT TTGTTACTCTCTGAGCCCCATTTTTTAATGGAGTTATTTGATTTTTTGAA GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC TTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTC CCATTTGTCAATTCTCGATCTTACAGCACAAGTCATTGCTGTTCTATTCA GGAATTTTTCTTTTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTTC TCTATAAGTTTCAGTGTTTCTGGTTTTATGTGAAGTTCCTTGATCCACTT AGATTTGACCTTAGTACAAGGAGATAGGTATGGATTGATTCGCATTGTTC TACACGATAACAATCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT TTTTTCCCCCTGGAGGGTTTTAGCTCCCCTGTCGAAAATCGAGGACCATA GGTGTGTGGGCTTCTTTTTGGGTCCCTCCATTCCTGTTCCATGGTCTCTT TGGTTTGTCTTTACCTCCCCTCTAGGCATTTTTTTCTTCCACCCCCCTCG TATCTTAATTTTTTCTTTTTCCCCTCTATGTCGTCCTCAAGACGTTCTTT TTTTTTTTTCTAATCAGATTCCTTTTTTTCTTTTTTCCTCTCTCTTCTTC CCCCATTTCTCTCCTCTCCCTTTTCTACCGCTCCTTCCCCTATCCTCN	TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXCCAATACTGGGGAGGGAGTCAGAGGCAAGGGAGA TTGTTGTGAGTTCCAGGCTGGCCATGAGCACTATTTGATCCTACCTCAAA ACCACGAGTAAGAAGGTTCAAAACCATGTCCATGGGATGTTTAAAGTGCC GTGTATATGACTAGCACAGATCAGTCACTGTGCAAATGTACAAGTTACTG TGAGGACAGAAATTTCTGGACTGTGGCCAGGAGGCTTGCAAAACATTAGA TAGATCCCTTTTTTATGGCACTTGCTCCCTTCGTGTTTGTGTGTGTGTGT GTGTGTGTGTGTCTTTCTTCCCGCCCTCTCTTCTCCTTTCTCTCCTTTTC TCTCCCCCCCCCCCTTTTCCTTTCTTTTTTTCCCTTTCCTCTTTCCCCTT TTGCTCTCTCTTTTCCCCTCTTTTTCTCCCCCTTCCGGTTTCCCTCTTCC TTTTTCCCCCCCCCCCCCCTTTTTTTTTTCTCCTCCCCTCTCCTCTTCTT CTTTTTTTTTTTCCTTTTCTCCTTTTTCTTTTTTTCCCCCCTCTCTCCTC CCTTTTACTCCCCCTTCCTTTCTCTTTTTCTCCTTCTTCGTCTTTTCTTC TTTCTCCCCCGTTCCCTTTCCTTTTCCTCTTCCCCGCCTTCATCCCTTTT GTCTTCCTCCTCTTCTTTTTCTTATTTTCCTTTCTTTTCCCCCTTTTACT TACCGCCCCCCCGTCTTTTCG
quality values	Open. Hide. 32 32 37 41 39 30 30 25 23 20 28 15 20 20 20 16 18 9 9 9 9 16 15 15 6 6 6 7 7 6 6 6 8 12 13 10 10 10 10 14 16 41 41 33 33 33 33 33 33 29 29 9 6 6 6 6 6 7 8 8 10 10 16 22 24 35 37 33 33 33 36 38 59 57 57 57 53 53 53 53 47 47 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 40 44 36 43 43 44 44 43 43 43 57 57 57 68 68 68 68 68 68 68 68 68 68 68 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 43 37 37 50 50 50 50 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 44 44 42 22 22 18 29 17 20 32 41 59 59 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 57 57 48 48 48 57 57 68 68 68 68 59 59 59 59 59 59 59 48 48 48 57 57 57 57 57 57 48 48 48 48 48 41 47 47 27 29 12 12 11 13 16 11 11 11 12 12 28 41 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 68 68 68 68 68 68 59 59 59 59 57 57 48 48 48 57 57 57 57 57 57 48 48 48 48 48 59 59 59 68 68 68 68 57 57 57 57 57 59 59 57 57 57 57 57 57 59 59 57 48 46 44 42 35 35 59 34 41 32 15 15 27 27 43 43 43 57 47 32 32 15 32 30 28 23 23 22 28 36 42 43 43 39 37 30 30 30 42 32 32 30 30 30 37 37 54 48 43 32 22 10 10 8 8 8 8 11 14 13 9 9 9 10 15 24 28 28 28 19 19 15 15 13 17 19 21 24 12 12 12 25 12 12 8 8 8 10 14 14 25 29 28 22 25 34 21 16 12 12 10 14 9 10 11 10 11 14 16 12 10 8 8 8 8 8 12 13 20 18 15 12 12 10 9 8 10 9 9 10 9 9 9 12 12 22 10 10 10 13 13 10 12 10 14 15 14 9 12 7 6 6 8 11 11 12 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 9 12 9 9 9 8 8 6 6 6 6 8 10 11 13 13 14 19 16 13 8 6 6 7 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 14 8 11 7 7 8 8 8 8 6 6 8 15 17 15 17 11 11 8 10 8 8 8 8 9 9 10 15 18 29 15 15 10 10 10 8 13 8 9 9 9 13 8 8 8 8 8 8 9 9 9 13 13 15 9 9 11 12 15 26 21 13 8 8 8 8 8 13 13 11 10 8 8 8 8 8 8 8 8 8 6 6 10 8 8 11 12 10 9 9 9 9 9 13 13 14 13 13 28 19 20 16 21 12 15 15 12 12 9 8 8 8 8 8 8 8 8 10 11 10 10 16 23 25 15 15 8 8 8 11 8 10 13 17 14 13 8 15 11 8 8 8 8 8 8 8 8 8 10 17 13 8 8 8 8 9 7 7 7 8 8 8 8 8 9 9 9 17 11 11 11 12 12 11 10 10 10 9 9 9 9 9 12 11 11 9 10 15 6 6 6 8 10 9 3 0	Open. Hide. 6 8 19 19 8 10 15 27 23 44 41 42 47 47 39 39 39 39 39 41 21 21 12 14 6 6 6 6 6 6 6 6 15 19 21 32 23 31 34 26 26 16 16 10 10 12 25 25 18 9 9 9 9 9 9 10 17 15 30 24 14 19 25 28 31 31 33 36 47 50 50 53 53 53 53 53 57 57 57 57 53 48 48 50 53 50 68 68 68 68 68 54 54 50 50 57 57 50 50 50 50 50 50 53 46 46 43 47 47 57 47 54 57 57 57 57 57 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 44 44 43 43 43 52 52 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 50 50 50 50 68 68 68 68 68 68 57 57 68 68 68 57 59 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 48 43 37 37 43 43 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 59 35 35 35 42 39 48 48 53 48 57 48 59 48 59 59 59 59 59 59 59 59 59 59 59 59 59 50 50 41 34 25 19 13 12 12 10 11 12 14 15 15 23 22 47 59 59 48 50 59 50 57 57 59 59 59 59 59 59 59 59 59 59 59 59 47 47 43 39 39 59 47 47 35 32 24 18 16 11 11 12 12 12 12 12 9 10 10 13 11 13 12 8 7 7 7 8 6 6 8 8 10 8 11 10 9 9 6 6 8 8 8 8 8 10 10 17 10 10 10 10 10 11 8 10 10 10 10 11 16 24 28 29 29 30 24 21 16 12 12 13 11 10 8 8 8 8 10 10 15 13 13 20 18 11 8 8 8 8 10 8 8 8 8 8 8 12 12 12 11 11 11 9 10 10 10 19 14 10 8 10 10 12 10 10 9 10 8 8 10 8 15 15 8 10 10 10 10 10 10 10 10 10 10 12 16 16 13 13 11 13 11 11 12 10 12 9 14 10 11 11 9 8 11 18 24 28 25 17 11 11 12 16 12 15 15 16 16 20 18 17 14 14 14 10 11 11 22 22 24 17 13 18 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 11 11 9 8 8 8 9 8 10 11 12 19 28 30 18 21 16 11 18 19 20 20 20 22 20 15 17 9 9 9 9 11 10 8 8 9 10 12 16 24 23 12 12 12 19 13 12 10 11 10 10 10 8 8 8 8 8 15 10 10 10 8 13 8 8 8 8 8 9 13 15 12 10 13 9 9 9 8 8 8 8 10 15 20 21 13 10 17 17 13 12 12 8 8 8 8 10 9 9 12 15 10 10 6 6 6 8 8 9 16 12 10 10 11 8 10 8 7 9 12 10 10 13 8 8 8 10 12 12 12 16 12 12 10 10 8 8 8 8 10 8 8 9 10 8 8 11 15 8 8 8 8 8 11 13 8 8 8 8 8 8 10 11 14 12 10 10 8 8 8 8 8 15 19 31 27 25 18 15 13 9 6 8 10 14 11 13 10 10 10 8 9 9 13 17 21 15 11 9 8 8 8 6 7 6 6 8 8 9 10 10 8 8 8 10 8 10 12 13 8 8 8 8 12 12 11 13 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no465_f10.g1 MSMg01no465_f10.g1 CHROMAT_FILE:
MSMg01no465_f10.g1 PHD_FILE: MSMg01no465_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:24 2005
         (288 letters)



>mm_chr5_65141944_65142631
          Length = 688

 Score =  439 bits (227), Expect = e-128
 Identities = 273/295 (92%), Gaps = 14/295 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatactggggagggagtcagaggcaagggagattgttgtgagttccaggctggccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccaatactggggagggagtcagaggcaagggagattgttgtgagttccaggctggccatg 514

                                                                       
Query: 61  agcact-atttgatcctacctcaaaaccacgagtaagaaggttcaaaaccatgtccatgg 119
           | || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 513 aaca-tgatttgatcctacctcaaaaccacgagtaagaagtttcaaaaccatgtccatgg 455

                                                                       
Query: 120 gatgtttaaagtgccgtgtatatgactagcacagatcagtcactgtgcaaatgtacaagt 179
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 454 gatgtttaaagtgccgtgtgtatgactaccacagatcagtcactgtgcaaatgtacaagt 395

                                                                       
Query: 180 tactgtgaggacagaaatttctggactgtggccaggaggcttgcaaaacattagatagat 239
           || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 394 tattgtgaggacagaaatttttggactgtggccaggaggcttgcaaaagattagatagat 335

                                                                  
Query: 240 ccctttttta------tggcacttgctcccttcgtgtttgtgtgtgtgtgtgtgt 288
           |||      |      || ||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccc------aggaaaatgacacttgctcccttcgtgtttgtgtgtgtgtgtgtgt 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information