Query= MSMg01no465_f16.b1 MSMg01no465_f16.b1 CHROMAT_FILE:
MSMg01no465_f16.b1 PHD_FILE: MSMg01no465_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:25 2005
(249 letters)
>mm_chr5_121884235_121884883
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 caaagggtaaaggtgtcctgtgccattgagctgagccccagtgcagtcctgcgctcgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagggtaaaggtgtcctgtgccattgagctgagccccagtgcagtcctgcgctcgtgt 260
Query: 61 acttgtatggagagatcggaggctctgggagccgggggactcctgcgtgtctgagtaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtatggagagatcggaggctctgggagccgggggactcctgcgtgtctgagtaact 320
Query: 121 tggcacttttaccacctaccccgattgtctggcgtctgaactttttgtatcattcatctt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tggcacttttaccacctaccccgattgtctggcgtctgaacgttttgtatcattcatctt 380
Query: 181 ttaatcctcagagcacacactcctcgtggggaaaggacctgtaggtaaggctgccgtgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatcctcagagcacacactcctcgtggggaaaggacctgtaggtaaggctgccgtgca 440
Query: 241 cagccttct 249
|||||||||
Sbjct: 441 cagccttct 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no465_f16.g1 MSMg01no465_f16.g1 CHROMAT_FILE:
MSMg01no465_f16.g1 PHD_FILE: MSMg01no465_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:25 2005
(395 letters)
>mm_chr5_122075478_122076272
Length = 795
Score = 644 bits (333), Expect = 0.0
Identities = 374/389 (96%), Gaps = 4/389 (1%)
Strand = Plus / Minus
Query: 7 ctgagaacagagctcacagggcggtgtccatgcctggaatctgcatctctgctttgcatg 66
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 ctgagaacagagctcacagggcggtgtccatgcctggaatctgcatctctgttttgcatg 448
Query: 67 tactttacatggcttcagctggctttcagagtgggatgggcacctctctgtctaggtggc 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 tactttacatggcttcagctggcttccagagtgggatgggcacctctctgtctaggtggc 388
Query: 127 cagaagccaagag--caggttttatggtggctgagggcaaggttctcaaccccagaggat 184
|||||||| ||| | || || |||||||||||| || |||||||||||||||||||||
Sbjct: 387 cagaagcc--gaggcccggcttcatggtggctgagagcgaggttctcaaccccagaggat 330
Query: 185 tgtggcagccaggaaccatttgtgttcccagcacattccgaggttagatcatgcccggtc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 329 tgtggcagccaggaaccatttgtgttcccagcacattccgaggttagatcatgcacagcc 270
Query: 245 tgtttgtgcccctggggtcacagcaactgaccctgtgcataacagcttccttggtcagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 269 tgtttgtgcccctggggtcacagcaactgaccctgtgcataacagcttccttggtcaata 210
Query: 305 tgtccaggcatggtatcttatgcctttaattctagcactcgtgagctgaggcaggaggat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgtccaggcatggtatcttatgcctttaattctagcactcgtgagctgaggcaggaggat 150
Query: 365 tgctgaaactttcagactagagtatgaca 393
|||||||||||||||||||||||||||||
Sbjct: 149 tgctgaaactttcagactagagtatgaca 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
