BAC Information

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BAC

Clone NameMSMg01-465F21
Chromosome5 (Build37)
Map Location 127,666,647 - 127,667,029
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465F21.T7 (MSMg01no465_f21.b1)MSMg01-465F21.TJ (MSMg01no465_f21.g1)
ACCAG549564AG549565
length769750
length of high quality
(start - end)
399 (45 - 443)179 (75 - 253)
definitionCHROMAT_FILE: MSMg01no465_f21.b1 PHD_FILE: MSMg01no465_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:26 2005CHROMAT_FILE: MSMg01no465_f21.g1 PHD_FILE: MSMg01no465_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGNGGAATTC
GCATCTTCCCGTTAGCCTGGTAGACCACCCAGCGGAAAGTGCCACTGTTT
CCAAGAGCTTCTGTTCACATATTTACAGATACCAGATTGCAGACACCATC
TGTAATACTAGGTATTAGAGATACCCACCCTGCAAGACATCATTTCAAAG
TAACCAACCTTCATCTGCCAGCTACATAGATTCTTAAGATGGTGAATAAT
AAACACTGACATGGCCCTGTCTTGGAAATGATCTACAATATTCTAGACCA
TTCCATGACATTGTAACATCTAAATAAAGGCCTAGGCTCCCCTGGCTTAA
GAGAAAGGGGGGAAACTGGCAACATTGCATACTAAATGTCCTTTTGATTT
TGTTTAAACTGTTGGCTCTTTTCTGCTTTGGNGAGGTTTCACAGTACCCA
AAATGCACTGTGCCCCAACACTCAACATCAACTTCTTCATCTTTTATCAA
TTGCTTCATTCCCAGATCACGTCTTAACTGGAGATTTTATACAGATGGTG
ACACATACCCTGGGTTACAGCGTTAGAAGAAAAGGAAGTTCCTTCCGAAA
ATGTTAGGGAAGGCCCGCCCCCAAATTCCAAAAAACTTGGGTTGGGTGGC
GGGGTTCATTTCCCTCTTTGTAACCCTGGGTAAATAGGCCCGAGGTTGGA
AAAAAAACTCTGAAAATCAGATATATATTTTTTTTTTCCTCCCCCCCCCC
CTAGAGGAAAAAATGGGCC
AGTGAGAGGCCTGGCGGCCGCCTGTGTTCACAGAATGGAGGTGACACTAT
AGAAGTAGCAGAGAAAGTCCTTGTCTTCTTCATGCAACCCAAGAACTGCT
TATCCTTGAGGCACCCCATCATCATCATCATCATCATCATCATCATTTTC
TCTCTCTCTTACACACACACACACACACACACACACACACACACACACAC
ACACTCGCACATCACCAGCATCTCTCATCATTTCTCCATTTACCTCCCAC
CCTACCTAGCTCTAGATTGGTAGAATCAGGTTCAGAAAGGGGGAGAAACA
AAAGAATAAGTCTGTCTGAAAGTCAAAGACCCAAATATGGGATGAGAAAA
CTTACTCAATACTATACGTGGCAGCAGAGATAGGAATGGCAGCTTACCTG
TATCTGCTTAACCAGGGAATCAAAGGCAGACAAAGCCATGGCTCATTAAA
GCCATTGAATTATGGGTAGTATGCCATGCAGATATGAAAACAAGAGTGTC
TTAGTCAGGGTTTCCATTGCTATGAAGAGACAAGATGACCAAGGCAACTC
TCAATGAAGGACAACATTTGATTGGGGGTGGNTTAAAGTTTGGAGGCATA
GCCCATTATCATCATGGCAGGGTGCAAGGCAAAAGGAGGGCGGAGAATAA
ATTAAGAGGTCTGCAACATGAACCGAGGGGGGGCCGAAAAATGTCCTTTC
CGCCCGGGGCTAGGGATAGAAATCAGGAACCTTAAAGTCACCCCCCCAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_f21.b1 MSMg01no465_f21.b1 CHROMAT_FILE:
MSMg01no465_f21.b1 PHD_FILE: MSMg01no465_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:26 2005
         (399 letters)



>mm_chr5_127666431_127667229
          Length = 799

 Score =  727 bits (376), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gttagcctggtagaccacccagcggaaagtgccactgtttccaagagcttctgttcacat 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gttagcctggtagaccacccagcggaaagtgccactgtttccaagagcttctgttcacat 276

                                                                       
Query: 77  atttacagataccagattgcagacaccatctgtaatactaggtattagagatacccaccc 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atttacagataccagattgcagacaccatctgtaatactaggtattagagatacccaccc 336

                                                                       
Query: 137 tgcaagacatcatttcaaagtaaccaaccttcatctgccagctacatagattcttaagat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgcaagacatcatttcaaagtaaccaaccttcatctgccagctacatagattcttaagat 396

                                                                       
Query: 197 ggtgaataataaacactgacatggccctgtcttggaaatgatctacaatattctagacca 256
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 ggtgaataataaacactgacatggccctgtcttggaaatgatctacaatattgtagacca 456

                                                                       
Query: 257 ttccatgacattgtaacatctaaataaaggcctaggctcccctggcttaagagaaagggg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttccatgacattgtaacatctaaataaaggcctaggctcccctggcttaagagaaagggg 516

                                                                       
Query: 317 ggaaactggcaacattgcatactaaatgtccttttgattttgtttaaactgttggctctt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaaactggcaacattgcatactaaatgtccttttgattttgtttaaactgttggctctt 576

                                  
Query: 377 ttctgctttggngaggtttcaca 399
           ||||||||||| |||||||||||
Sbjct: 577 ttctgctttggggaggtttcaca 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)