BAC Information

Click to search

BAC

Clone NameMSMg01-465G19
Chromosome5 (Build37)
Map Location 51,994,561 - 51,994,801
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465G19.T7 (MSMg01no465_g19.b1)MSMg01-465G19.TJ (MSMg01no465_g19.g1)
ACCAG549608AG549609
length985770
length of high quality
(start - end)
---241 (68 - 308)
definitionCHROMAT_FILE: MSMg01no465_g19.b1 PHD_FILE: MSMg01no465_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:31 2005CHROMAT_FILE: MSMg01no465_g19.g1 PHD_FILE: MSMg01no465_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTATCCCTCACTCGCGCCTTTTATTTATCAAATAATGATGGTGGCGAC
TACGCTGATAATTACCCCTAAAAAAGCGTATAACATGAAAAGTTAACGTG
ACCCGCTGATTTTTAAACAGGGCGGAATAACGCGCCGCTCCTACAGTCGT
TGCCGTGGGGGCCGTGCGGCGACGGCAGGCGGAGAAGCGTTGTGTACGGT
GTTCTTCTCGCGTAGATTGCGAGGAACCAACACAACAATCTATCTTCCTT
CCCGCTTCCGGTTGTTTTGTGTTATAGATATGTTTCCGGTGTGTTGGGGG
TGATATACTCTGTAAAAAATTTTGCGCAACACCGGCACCCGATATTAACG
CCTCTACTCAAATTTTCAGCAAGTGCAATACGACCATACAAAGTCGTGCG
GACGGGTAGAGCGCGGTTGCACTACTGAATTAATTTGCGTCGACACTTAT
AGCAAGAGTTGGAGACAAATACTTAGTCACGTCATGCACGGGAGGGGACG
AGCGGTGCTGCTCTTATATTAATTCTCTTCCTGAAAGGCACGTGTACAAA
ACCACACTATATAAAAGCGCTTTATATGCGGGCCGCCCCGGGCTTCTACA
ACCGGAGAGAGTATATAGAGAACGACACGATACGCTGCACGATTAGAGTA
TCACGTAGCGCTAATCGCGCACTCGCTCCGCCATACCAGTTGGCGGAGAT
GGTAGAGCCGACGATTACAGACTGCAGAGGAGCTCACAGAGTGTGGCTCA
GAAGGACGGCTGCCGCGCAGCGCAGATAGAGAGAGTGTAACGAGTTGTGT
GGCGAGCAGACGAGATGAAGGAAGAAGAACACGACGCGGGGCCGGAGGTA
TGTTGATAAGGTGAGAGGTTGATGGAGAGTGAGGNACCGGGGACAACCGA
GCCGTAGAAGACGGCGAGACAGTGGCGTGTATCGCCCGGCCTTCAACGGG
TATACGAGGTGGTCCATGCGTCCGAGTGAGGCAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGATGTAGTTTTACATGCGCCTAAGTTGGGA
TTCCCAGAGGGACCAATTTACTAATACCAAGTGGGTGAGGGCTAACTGGG
ATACAGTGAAAACAGAGAGGTGCCGATTCAGTAAGTGTAGATGTGAATTT
TAAATAAATAACAGTAAAGCTGGCATTTCAATGATTGGGTCTTGTCCTAA
ACTCCAAACTGGGTTGATCTTCGTATACTGAACGAAAATATTCTGAGGGT
ATAGGTAGTTTTTTCCATGTTTTGTCCAACCTGACCATGGAGAATTGTTA
AGAAACAGGAAATCATTTAGATACAATAAGAATCTCAATATTGGTACCAA
GTCCTTTCCTAGGGGAATATTTTCATATTTCTTTGGAGAACTCAGAATTT
ACTCTGCTTCTTTCTGATGCTTCCTTGCATGTGTTCTGAATGAATGACTG
GGCTTGGGCAGGACCGCTTGAAAAAATGCTTTGATTGTCATGCCTAGTAT
GAAATTTGTCTAGCCTCCATGCTCCCTTTTTTGTCCTTTGCCTCTTTTCA
CAATTTTCCCGTGCCCCCCCCCATTTAACCCTCCCCCCCCTTTCTATTTT
TTTTTTTCTATTCCTTTTTCCCCCTCCTACTTTCTCTTCTTTCCCTACCT
TATTTCCTTTTTTTTACTATATCACCCCCCCCCCCCCTCCCCTCACTTTT
CCCTCTATTCTCCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_g19.g1 MSMg01no465_g19.g1 CHROMAT_FILE:
MSMg01no465_g19.g1 PHD_FILE: MSMg01no465_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:31 2005
         (241 letters)



>mm_chr5_51994361_51995001
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagatgtagttttacatgcgcctaagttgggattcccagagggaccaatttactaatac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 caagatgtagttttacatgcgcctaagtttggattcccagagggaccaatttactaatac 382

                                                                       
Query: 61  caagtgggtgagggctaactgggatacagtgaaaacagagaggtgccgattcagtaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgggtgagggctaactgggatacagtgaaaacagagaggtgccgattcagtaagtg 322

                                                                       
Query: 121 tagatgtgaattttaaataaataacagtaaagctggcatttcaatgattgggtcttgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatgtgaattttaaataaataacagtaaagctggcatttcaatgattgggtcttgtcc 262

                                                                       
Query: 181 taaactccaaactgggttgatcttcgtatactgaacgaaaatattctgagggtataggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactccaaactgggttgatcttcgtatactgaacgaaaatattctgagggtataggta 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)