Query= MSMg01no465_h11.b1 MSMg01no465_h11.b1 CHROMAT_FILE:
MSMg01no465_h11.b1 PHD_FILE: MSMg01no465_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:34 2005
(556 letters)
>mm_chr5_61317514_61318470
Length = 957
Score = 1038 bits (537), Expect = 0.0
Identities = 552/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 1 ccagtgaaagtgttctctctctttgctctaactcctattctgtgcactgttcttcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccagtgaaagtgttctctctctttgctctaactcctattctgtgcactgttcttcaaata 698
Query: 61 cttttgtgggtaacagaatgctcttttgcttaaggcttttttaatgactctagtttttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cttttgtgggtaacagaatgctcttttgcttaaggcttttttaatgactctagtttttgg 638
Query: 121 ccaagaaaatacaatcttttgctgttataaactgacttctcagtctccaaaaaagaaact 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 637 ccaagaaaatacaatcttttgctgttataaactgacttctcagtctcccaaaaagaaact 578
Query: 181 tgaagtaatttttatacttgaaaatcaattgtgttttctgtttctttttgtttacatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgaagtaatttttatacttgaaaatcaattgtgttttctgtttctttttgtttacatatg 518
Query: 241 ttattttttcaatttcgtagtgagtcactgacacctcttctttacaaaaatgaggaaaga 300
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttagtttttcaattttgtagtgagtcactgacacctcttctttacaaaaatgaggaaaga 458
Query: 301 aatccc-tttaagtgatctaaaatatcttttgtttctacttgagttcttttatgtatttt 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatcccttttaagtgatctaaaatatcttttgtttctacttgagttcttttatgtatttt 398
Query: 360 gtctgtagtgcattcttgattttcatacctcctcttgacactgctttcacctttgcggtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 397 gtctgtagtgcattcttgattttcatacctcctcttgacactgctttcacctttggggtt 338
Query: 420 ccttatcagtatttttttccaaagtagtaaaggagcctttcaaataagaactgacaattc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccttatcagtatttttttccaaagtagtaaaggagcctttcaaataagaactgacaattc 278
Query: 480 cattttgttactaggtgaccattcaaaactaaaggaccagggagaggcaaagcaatagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cattttgttactaggtgaccattcaaaactaaaggaccagggagaggcaaagcaatagtt 218
Query: 540 attagatttgtcaatga 556
|||||||||||||||||
Sbjct: 217 attagatttgtcaatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_h11.g1 MSMg01no465_h11.g1 CHROMAT_FILE:
MSMg01no465_h11.g1 PHD_FILE: MSMg01no465_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:34 2005
(234 letters)
>mm_chr5_61169321_61169952
Length = 632
Score = 433 bits (224), Expect = e-126
Identities = 231/234 (98%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 1 tcatcctagctccaaaagctaattttcaacttgtagactttcttggcttactacatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcctagctccaaaagctaattttcaacttgtagactttcttggcttactacatagag 260
Query: 61 tggttgatatcaattccatgtctgttttagttttttttttttttttttcagttgacttgg 120
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 261 tggttgatatcaattccatgtctgttttag--ttttttttttttttttcagatgacttgg 318
Query: 121 aggctgagtgtcttttattttggcttttatagaatataaagtatttactgatgtttcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggctgagtgtcttttattttggcttttatagaatataaagtatttactgatgtttcatt 378
Query: 181 atggaatgtgtcagtgttgagttgcaggattttatttttttgaattttacctaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atggaatgtgtcagtgttgagttgcaggattttatttttttgaattttacctaa 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 632
Length adjustment: 9
Effective length of query: 225
Effective length of database: 623
Effective search space: 140175
Effective search space used: 140175
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
