Query= MSMg01no465_h17.b1 MSMg01no465_h17.b1 CHROMAT_FILE:
MSMg01no465_h17.b1 PHD_FILE: MSMg01no465_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:36 2005
(542 letters)
>mm_chr5_59943577_59944518
Length = 942
Score = 984 bits (509), Expect = 0.0
Identities = 536/547 (97%), Gaps = 5/547 (0%)
Strand = Plus / Plus
Query: 1 agttatgtaaatactaaacatctggggtagggcataaaggaattgtagttagatctgcct 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 196 agttatgtaaatactaaacatctgggggagggcataaaggaattgtagttagatctgcct 255
Query: 61 gcaatgataggttttcagctttcctgcatttttgttcagacttggatggaaatcctgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gcaatgataggttttcagctttcctgcatttttgttcagacttggatggaaatcctgatg 315
Query: 121 atacagttaccttttgccttccatactcctataattaccataagttctgtcct---ttt- 176
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 316 atacagttaccttttgccttccatactcctataattaccataagttctgtccttcattta 375
Query: 177 -tgatacttaggtggaatcacttcctttgtctgtcatcagtgctttttcctgggtaaaga 235
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgagacttaggtggaatcacttcctttgtctgtcatcagtgctttttcctgggtaaaga 435
Query: 236 gttgttaattcttttattcccccaaacatctacgaaacaccatgccattttataaatctg 295
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 436 gttgttaattcatatattcccccaaacatctacgaaacgccatgccattttataaatctg 495
Query: 296 tgtctttaattataccacaggaaagaacaggcctagccagaggtaattaaaataagcaag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgtctttaattataccacaggaaagaacaggcctagccagaggtaattaaaataagcaag 555
Query: 356 tttttttttaaaacaatactataatatactatatattttagttataaatgtgtgcctata 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttttttttaaaacaatactataatatactatatattttagttataaatgtgtgcctata 615
Query: 416 attggtctgccaaacacaatttcctaaagcagcacctatcgttcagtggtcagggtcata 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attggtctgccaaacacaatttcctaaagcagcacctatcgttcagtggtcagggtcata 675
Query: 476 cactttggaaacagcacatgaaatcagacatgaaatctttcgcccagaacactctgggaa 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 cactttggaaacagcacatgaaatcagacatgaaatctttcgctcagaacactctgggaa 735
Query: 536 tgattta 542
|||||||
Sbjct: 736 tgattta 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_h17.g1 MSMg01no465_h17.g1 CHROMAT_FILE:
MSMg01no465_h17.g1 PHD_FILE: MSMg01no465_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:36 2005
(528 letters)
>mm_chr5_60121260_60122187
Length = 928
Score = 698 bits (361), Expect = 0.0
Identities = 382/389 (98%)
Strand = Plus / Minus
Query: 1 tttgacggaggatacttttaagctggtagtgctactctagggcatttgtagacattctca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 389 tttgacggaggatacttttaagctggtagtgctgctctagggcatttgtagacattctca 330
Query: 61 tagggatctgagagatgcacacctatttattacatttatttcctaacaaattatagtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tagggatctgagagatgcacacctatttattacatttatttcctaacaaattatagtaaa 270
Query: 121 ataatcatcccatacctgttatttgcccaaggctaaagatgcatatcttctagtaatatg 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 269 ataatcatcccatacctgttatttgcccaaggctaaagatacatatcttctagtaatatg 210
Query: 181 atgcatttattttttctcatatattaatcccaattgtacttttcccttctcccctacccc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 209 atgcatttattttttctcatatattaatcccaattgtacttttcccttcttccctatccc 150
Query: 241 cagtaaccccactcacctaccccttattctcagatccacttgccctccatctcccctcag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cagtacccccactcacctaccccttattctcagatccacttgccctccatctcccctcag 90
Query: 301 aaaagtgcagggcttccagggacttcaaccaactatggtataagaagctacgataagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 89 aaaagtgcagggcttccagggacttcaaccaactatggtataagaagctacaataagatg 30
Query: 361 aggtatatattctcatttcaagactggac 389
||||||||||||||||||||||| |||||
Sbjct: 29 aggtatatattctcatttcaagattggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
