Query= MSMg01no465_i14.b1 MSMg01no465_i14.b1 CHROMAT_FILE:
MSMg01no465_i14.b1 PHD_FILE: MSMg01no465_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:40 2005
(402 letters)
>mm_chr5_17449274_17450075
Length = 802
Score = 721 bits (373), Expect = 0.0
Identities = 397/405 (98%), Gaps = 3/405 (0%)
Strand = Plus / Plus
Query: 1 aatagctgtggacaagcattcatttactctttcatcagtatggctctatgtttcataagg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagctgtggacatgcattcatttactctttcatcagtatggctctatgtttcataagg 260
Query: 61 cagtcaaaaagtcaagtcatatatcctagggacctttgtacttgaggcaccctttgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtcaaaaagtcaagtcatatatcctagggacctttgtacttgaggcaccctttgaaaa 320
Query: 121 ataaaatttatatatataagtaaagcacattacatgctcaggagaattttctaggtaagt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatttatatatataagtaaagtacattacatgctcaggagaattttctaggtaagt 380
Query: 181 ttcctttctttgctttcttcttcttctttttttt-catttttaaagtaagtgtgtgtgtg 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttcctttctttgctttcttcttcttctttttttttcatttttaaagtaagtgtgtgtgtg 440
Query: 240 tg-g-ggggggaatcttcctcttctaccttgttttgagagatctcttgaaggtcatcatt 297
|| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtggggggtatcttcctcttctaccttgttttgagagatctcttgaaggtcatcatt 500
Query: 298 gtatagggtgtgagcgtctggagagtctcctggtttctcgtcctatcttgtcccatgaat 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 501 gtatagggtgtgagcgtctggagagtctcctggtttctcatcctatcttgtcccacgaat 560
Query: 358 gatgagattattgatatgtgctgctgacttcatttgacttgggtt 402
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgagattattgatatgtgctgctgacttcatttgacttgggtt 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_i14.g1 MSMg01no465_i14.g1 CHROMAT_FILE:
MSMg01no465_i14.g1 PHD_FILE: MSMg01no465_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:40 2005
(388 letters)
>mm_chr5_17597547_17598335
Length = 789
Score = 638 bits (330), Expect = 0.0
Identities = 368/386 (95%), Gaps = 11/386 (2%)
Strand = Plus / Minus
Query: 1 tctgttttaattggattgttttgagggatcgttgtgaatcaggattgaggacaaaggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tctgttttaattggattgttttgagggatcgttgtgaatcaggattgaggacaaaggcaa 705
Query: 61 gaagggagcctcagacttggaacaacttatttattcataagtagcaacaaacagtgagat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 704 aaagggagcctcagacttggaacaacttatttattcataagtagcaacaaatagcgagat 645
Query: 121 gggatcacattcgtgtacacacacacacacacacacacacacacacacacacacacacac 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gggatcacattcgt------acacacacacacacacacacacacacacacacacacacac 591
Query: 181 acacacttcactaacttccagtctggcctgatgtcataaactggcttgatggtggtgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 590 acacacttcactaacttccagtctggcctgatgtcataaactggcttgattgtggtgtg- 532
Query: 241 tt---gtattgttagagatgtgtccttctgcttttgggttcagctggagctcagtgtgtg 297
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 531 -tcaggtaaggttagagatgtgtccttctgcttttcggttcagctggagctcagtgtgtg 473
Query: 298 gtgcaggcttgtttcattcaagggtgtgtgtccaggttgctgtactggatctcttagcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtgcaggcttgtttcattcaagggtgtgtgtccaggttgctgtactggatctcttagcaa 413
Query: 358 gatggcatctctgtgggactctggga 383
||||||||||||||||||||||||||
Sbjct: 412 gatggcatctctgtgggactctggga 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space: 295620
Effective search space used: 295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
