Query= MSMg01no465_m21.b1 MSMg01no465_m21.b1 CHROMAT_FILE:
MSMg01no465_m21.b1 PHD_FILE: MSMg01no465_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
(241 letters)
>mm_chr5_49893523_49894162
Length = 640
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 1 atcaaaggtcgaaatccagaaaaataattcctcttcactttggcttcaaggcatggattg 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atcaaaggtcaaaatccagaaaaataattcctcttcactttggtttcaaggcatggattg 260
Query: 61 aactcacttctattgaattcccaaactgtacacttgactattgagtctaatgattacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcacttctattgaattcccaaactgtacacttgactattgagtctaatgattacctc 320
Query: 121 tgtgagcatatgctatgattcatcatgaaacatctatcattttaaaaagtatctgttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgagcatatgctatgattcatcatgaaacatctatcattttaaaaagtatctgttatt 380
Query: 181 ttttaaaaaaagcatcttttatctatacatacaaattttgtctaaacttaatgtaagata 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaaaaa-gcatcttttatctatacatacaaattttgtctaaacttaatgtaagata 439
Query: 241 t 241
|
Sbjct: 440 t 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space: 146392
Effective search space used: 146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no465_m21.g1 MSMg01no465_m21.g1 CHROMAT_FILE:
MSMg01no465_m21.g1 PHD_FILE: MSMg01no465_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
(217 letters)
>mm_chr5_50041959_50042575
Length = 617
Score = 416 bits (215), Expect = e-121
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 1 taagcacagtggcataaagagaaaagcgcagttcagagtgaaacacagaagtgaatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 taagcacagtggcataaagagaaaagcgcagttcagagtgaaacacagaagtgaatttac 356
Query: 61 ccttctgtgaagatgtatttttaggatttttttttctttagcagttggagagtttgttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ccttctgtgaagatgtatttttaggatttttttttctttagcagttggagagtttgttga 296
Query: 121 ctggcaaagatctaccaccctttagcaaatgtgtcatcccaagggtagaaaagaaatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctggcaaagatctaccaccctttagcaaatgtgtcatcccaagggtagaaaagaaatatc 236
Query: 181 tttgcatatggtgttttttgttttttgggtttttt 215
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tttgcatatggtgttttttgttttttgggtttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space: 126464
Effective search space used: 126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
