BAC Information

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BAC

Clone NameMSMg01-465N19
Chromosome5 (Build37)
Map Location 79,920,345 - 79,920,769
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465N19.T7 (MSMg01no465_n19.b1)MSMg01-465N19.TJ (MSMg01no465_n19.g1)
ACCAG549943AG549944
length782833
length of high quality
(start - end)		475 (35 - 509)40 (65 - 104)
definitionCHROMAT_FILE: MSMg01no465_n19.b1 PHD_FILE: MSMg01no465_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:07 2005CHROMAT_FILE: MSMg01no465_n19.g1 PHD_FILE: MSMg01no465_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGTG
TTCTAAGAAACCATAGAAAGATATGAAAGAGGGAATATGTTACAGAGCTT
GATTCTAGATACCTAAGCAGAACTCCAGAAATCACTTCCCTACCACAGAA
AGGAAGTACCTGATACGTCCCTATTTAACATGGACACAGGGAAATGATAC
AGAGTATCATCTAGTTACTATGAATTCAGCTCAGAAATGGTTAAAGTTTT
TATAAAAATTGTGGTGATCTGAAAAAGTCTGGCCCCCATAGACTCATATG
TTTAAATGCTTGGCTCTTTGAGAATAGCATCATCAGAAGGTGTGGCCTTA
TTGGAGGAAGTGTGTCACTTGGTGGTGGGCTTTATGGTCTCCTCTGGTCA
GGCTCTGCCCGGTGTAGAATCTAATAACCTTATGCTGACGATGGATCAAG
ATGTAGAACTGTCACCTCCTTTTCCAGCACCACGTCTGCCTGGACCCTGC
CATGCTTCCTGCCATGATAATAATAAAGTAAATTTCTGAAACTCTAAGCA
AGCCCTAATTAAAAGTTACTTTAAAGAATTGCCTTGGGCATGTCTCTTTC
CAACTATACAAAGTTTGCTAAAANCAAATGAAATGAACTTGGGGTTCAAA
TTGTCCAAAAGGCCAAAAAAACTATAATGGAATCCTGGCCTTATAAAAAT
TGAATTGATATTTTGAGATGGTTGGGAGGAAACCCCGATTGGGCGACCTC
AACCCTATTCAGAAAAAAATGGTTTTTAACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA
CCCACAAAATTCCAGGAGGGGAAACGTCATCTGAACATATCAAATGAAAA
TGTATTTTCCCTTTTGTTTGTTTGTTTTTTTTGCTTTTTTTTTGTTTTCG
CCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCC
CCTCCGCCTCCCCCCCCTCCCCTCCCCCCACATCACCCCCACATCCTCAA
CACATCACACAACCACACCACCCCCCCCCCCACCCAAACAAACCACCACC
CACCTTTTCTTCCCCAACCAAAAACCCCCAAACCGACACAAACACTCCAA
ACCCAACCACCACCCACAATAACCACCCACCACCCAAACCCAACACAAAC
TCCACCCCCAAAATCCATCCCCCCCCCTACCCCAAACAACCCCCCCCCCC
CCCAACCACACCCAAAACCAAAAACCCCCCACCAACACCAACCCACCACC
CAAACACACCCCAACCACCCACAACCACAACCCAACCACCCCCCAAACCA
CACACAAAACACACACACCCCCCCCCCCCCCAACACCCCACCCCCCCCCC
CACCCCCAAAACCCACCCCCCCCACCAACACACCCCCAAATTAAAAAAAA
AAACCCAAACCACCCCCACCCACCACCCACCAAACCCTCCCCCATACACC
CCCCCCCCCCAAAAACAAAAAAAAAACAAAATCCAACAACCACCACACCC
ACCCCCCCCTACCAATCAACACACTAACCCCCCCCCACCTAACAACCCCC
CCACCCCCCCACCCAAAACCACACCCACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_n19.b1 MSMg01no465_n19.b1 CHROMAT_FILE:
MSMg01no465_n19.b1 PHD_FILE: MSMg01no465_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:07 2005
         (475 letters)



>mm_chr5_79920345_79921219
          Length = 875

 Score =  791 bits (409), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtgttctaagaaaccatagaaagatatgaaagagggaatatgttacagagc 64
           |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 gaattcagtgtggtgtaagaaaccatagaaagatataaaagagggaatatgttacagagc 366

                                                                       
Query: 65  ttgattctagatacctaagcagaactccagaaatcacttccctaccacagaaaggaagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgattctagatacctaagcagaactccagaaatcacttccctaccacagaaaggaagta 306

                                                                       
Query: 125 cctgatacgtccctatttaacatggacacagggaaatgatacagagtatcatctagttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctgatacgtccctatttaacatggacacagggaaatgatacagagtatcatctagttac 246

                                                                       
Query: 185 tatgaattcagctcagaaatggttaaagtttttataaaaattgtggtgatctgaaaaagt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 tatgaattcagctcagaaatggttaaagtttttataaaaattgtggtgatctgaaaaaat 186

                                                                       
Query: 245 ctggcccccatagactcatatgtttaaatgcttggctctttgagaatagcatcatcagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctggcccccatagactcatatgtttaaatgcttggctctttgagaatagcatcatcagaa 126

                                                                       
Query: 305 ggtgtggccttattggaggaagtgtgtcacttggtggtgggctttatggtctcctctggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggtgtggccttattggaggaagtgtgtcacttggtggtgggctttatggtctcctctggt 66

                                                                       
Query: 365 caggctctgcccggtgtagaatctaataaccttatgctgacgatggatcaagatgtagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  caggctctgcccggtgtagaatctaataaccttatgctgacgatggatcaagatgtagaa 6

                
Query: 425 ctgtc 429
           |||||
Sbjct: 5   ctgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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