GGGGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCG
CGGAATTCAGAAGGTTTTCCAACATGAGAGAACCGTGCTCCCAAAGAGAA
GGGAGCTGTGATGTCCCCACTGAGCCTTCTATCCTAAGTTACAAATTCCT
ATGTCATACCCTTACTGAATCCACAATTTGGCTTCCATTTATAGGGACTT
AAACATTCTTCTAGCCAAAGAGGTTCAGCTAATAACTTAAATAAAAAATT
GAAATGTTTAAGTTCAACAAACATTTTTTGATCATCTTACACATAAGCAG
TCCATTTGGAAGATTTTATATTTTTTGAGAAAAATATAAAATAAGTCCTG
CTCTAAAAAAAAAAAACTCACTATCTGGAGATGCAGTCATGGGTGTGGAT
TCAGATCGAATATAGCAAGTTCTGGATAAACAAATCTTAGAGACTATTAT
CTAACCCATGATGGATGATTATTTTAAAGAATGCTTTTGATGTAGGTGGT
TCTTAAGGGAAGTCATGAAGCATATATTTTCCAGTTGAAGAGGCATAACA
TCTTGCAAACAAAGGGGATTTATCATACTGAGGAGTCTATGTAAAATGTA
AGGATAGAACTGTGGAGGGAAACATAAATGTTACAGTCAGAACATGTTCA
TCCAGGGAGGATCTATTAGATGTCAAGCTAGAGGGCATTAAGCGTGAGTT
ATGGTTTACCACCCCCTATGTAATGAAGCTTTCATGCT

AAAATCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGAATGTATCTCCTGTAT
TCTGTGTGGGTTTTTCCTTTTCTTTATTTTTCTTTTCTTTTCTTTTCTTT
TCTCTTCTCTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTT
GTCCAATATCCACTTATTAGTGAGTACATTCCATGCATGTCCTTATGGGT
CTGAGTTTCCTCACTCAGGATGATATTATCCATTTGCTGCAAAAGTCAGG
ATGTCCTCGTTCTTAAAGCTGTATATTATTCCATTGTGTAAATGAACCAC
ATTTTCTGTATCCATTAAGGGAACCTATAGAGCCATCTCCAGCAGGAAGA
CAGTACATCACGTGAGAGATGGGGTTGCCATCACACAGTCACACCTCTGA
CCCATAATTGTTTCTGTCTGAAAGAATTATAGGGATAGAAATGGAAAGAC
ACCTGAGGAAAAGAAGGTCCAGTGACAGGCTCAAAGTGAGATCCACCTAA
AGAGGAGGTCCCAAGTCCTGACACTATTACTTAGGCTATGGAATGCTCAC
AAAAAGGGATCTATTATGACTGTTTCTCCAAAGAACTAACAAGTATTTTT
ATATATCTAAAAGTAAATATTTACACCCAACCCATGTACTGAAAACTGTT
GAACCCCTGGTGGTTAATATAAATAAAAGTCTAACAAAATTATATTATTC
TTCT

Query= MSMg01no466_d21.b1 MSMg01no466_d21.b1 CHROMAT_FILE:
MSMg01no466_d21.b1 PHD_FILE: MSMg01no466_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:39 2005
         (509 letters)



>mm_chr5_39904729_39905638
          Length = 910

 Score =  899 bits (465), Expect = 0.0
 Identities = 501/523 (95%), Gaps = 18/523 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagagaaccgtgctcccaaagagaagggagctgtgatgtccccactgagccttctatcct 60
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 192 gagagaatcgtgctcccaaagagaagggagctgtgatgtccccactgaaccttctatcct 251

                                                                       
Query: 61  aagttacaaattcctatgtcatacccttactgaatccacaatttggcttccatttatagg 120
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaattacaaaatcctatgtcatacccttactgaatccacaatttggcttccatttatagg 311

                                                                       
Query: 121 gacttaaacattcttctagccaaagaggttcagctaataacttaaataaaaaattgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gacttaaacattcttctagccaaagaggttcagctaataacttaaataaaaaattgaaat 371

                                                                       
Query: 181 gtttaagttcaacaaacattttttgatcatcttacacataagcagtccatttggaagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtttaagttcaacaaacattttttgatcatcttacacataagcagtccatttggaagatt 431

                                                                       
Query: 241 ttata----ttttttgagaaaaatataaaataagtcctgctctaaaaaaaaaaaa----- 291
           |||||    ||    ||||||||||||||||||||||||||||||||||||||||     
Sbjct: 432 ttataggaatt----gagaaaaatataaaataagtcctgctctaaaaaaaaaaaaaaaaa 487

                                                                       
Query: 292 -----ctcactatctggagatgcagtcatgggtgtggattcagatcgaatatagcaagtt 346
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagaactcactatctggagatgcagtcatgggtgtggattcagatcgaatatagcaagtt 547

                                                                       
Query: 347 ctggataaacaaatcttagagactattatctaacccatgatggatgattattttaaagaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctggataaacaaatcttagagactattatctaacccatgatggatgattattttaaagaa 607

                                                                       
Query: 407 tgcttttgatgtaggtggttcttaagggaagtcatgaagcatatattttccagttgaaga 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgcttttgatgtaggtggttcttaagggaagtcatgaagcatatattttccagttgaaga 667

                                                      
Query: 467 ggcataacatcttgcaaacaaaggggatttatcatactgagga 509
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggcataacatcttgcaaacaaaggggatttatcatactgagga 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)