BAC Information

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BAC

Clone NameMSMg01-466E23
Chromosome5 (Build37)
Map Location 81,711,217 - 81,711,617
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466E23.T7 (MSMg01no466_e23.b1)MSMg01-466E23.TJ (MSMg01no466_e23.g1)
ACCAG550286AG550287
length759814
length of high quality
(start - end)
402 (76 - 477)---
definitionCHROMAT_FILE: MSMg01no466_e23.b1 PHD_FILE: MSMg01no466_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005CHROMAT_FILE: MSMg01no466_e23.g1 PHD_FILE: MSMg01no466_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCXXXXXXXX
XXXXXXXXXXXTGTCTTCTCAGGATAAGTTTGATAGACATCTGAGGTACA
TTTCTTGAGTCTGTAATGTAGGCTCTATAAGCCTCATTCATCTATGCTTG
CCAGCTCTACTGTAGGAGCCCTTTGTCCCTTAAACAGAAAACAAGGATGT
CTCACAACTGTTACTAATTACCCTCTGCTACATCCAGCCGCTCCTGAAAA
AAAAAATCTCAGTTCTAACTCTATTTGCAGAATGCAAATCTGCAAGGCTC
TATCTTTATTTTGGAGAGATTATGTCTAACGCAGTGAAGGGAAGGCATAT
ATACAGTGAGTTATCTAAATTCTAACATCCTGCATATTACAGACCATGAG
GACACTCTCAGAAAGATATTTTGAGGAAAATCTTCCCTTCCAGAAAGATT
TGACAAAAGCAAGGCGGTTGAGAAAACCTAACCAAAACAAACAAATAAAA
CCAAGATACAGCTCCTCTAGAGTCAGTGAGATCCTGGATTTTCAGTTGTT
CATCCTCATGATTTAGCCAGGCCACAAAACTAGGAAGAAACCTGCTGGAC
CCACCTACCCGGTATGTTTATGGCTTGCCGGAAAAGGCGTTATAATTTTA
TTATAAAATTCCCGCCGTTGCTGGAAAAACCCTGGTAACCTTTAAAGGGG
GGTTAAAAACCACCGGGTATAATTATCCCCTCACCTATTTTATTACGCCT
TTATTTTTN
TTCTCCTCGATGTAGTGGTAGGCTGGNGGACGNCGGTTTCACACACGANG
NGAANNANAGAATGACAAAGACAGGGGGAAAGCCGNCGACCGCGGCCCCC
CAAGAGCAGGGATTTTTTGCCCGCACCAACACACCCAGCTAGTTCACCAT
TCTTATATTCTGATTTATAGTGGGGGGGGGACGGACGCTGTGGGAGATGC
TAAAAAGTGAGTCAGGGGGCTACCGGGGGTTTGAGCTCTGGAACATCTTT
TGTGCTGGCGGTTGCGTTGGTGTTCGGGTAGTGAGAGGGGGTCGAGCGCT
TAGGAGGGAGGGAAGTTTTTTTTTTTTAGGGCAAGGGGGGCAGAGAGGGA
TGGATAGATTTGTATTTTCTCCGCGATATATGGTGCGAGCGGCGGCATAT
ACTCGTTTTTTTGGTTTGTGTTTGGCCCCCCCCCCCCCCTCACAGGATGT
AGTATGTATCTGTGTGACGCTAACCTTAATTACGACGGGCTTAGAGGGAG
CTTGACTGTTGTGACCCCATTAATCCTTGCTTTTTGTTTCCCTCTGACGC
TCCCCTTGTTTCATGCTCTGCTCCTCCTCTGTTTTTTCTCGACATTTTAT
TCCGGTTTTTTCTAGTCCCAACCTCACTTAAGAGATTAATATTACCTAAT
TAACGATGATGCGTCATATCTCTGATTTTTTTATTCGCTCTCCTCCAAGT
TCTTGTGTCAGATTTGCAGATCACGAAGAGCCCTCGTCCCTCTTAACCCT
TTTCCCCATACTCTCAGTTATGCACCCAATATATCATGCTCCGTTTCATT
TCCGATAGAAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_e23.b1 MSMg01no466_e23.b1 CHROMAT_FILE:
MSMg01no466_e23.b1 PHD_FILE: MSMg01no466_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:45 2005
         (402 letters)



>mm_chr5_81711017_81711817
          Length = 801

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%), Gaps = 1/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtttgatagacatctgaggtacatttcttgagtctgtaatgtaggctctataagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagtttgatagacatctgaggtacatttcttgagtctgtaatgtaggctctataagcctc 542

                                                                       
Query: 61  attcatctatgcttgccagctctactgtaggagccctttgtcccttaaacagaaaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attcatctatgcttgccagctctactgtaggagccctttgtcccttaaacagaaaacaag 482

                                                                       
Query: 121 gatgtctcacaactgttactaattaccctctgctacatccagccgctcctgaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 gatgtctcacaactgttactaattaccctctgctacatccagccgctcctg-aaaaaaaa 423

                                                                       
Query: 181 atctcagttctaactctatttgcagaatgcaaatctgcaaggctctatctttattttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atctcagttctaactctatttgcagaatgcaaatctgcaaggctctatctttattttgga 363

                                                                       
Query: 241 gagattatgtctaacgcagtgaagggaaggcatatatacagtgagttatctaaattctaa 300
           ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagagcatgtctaatgcagtgaagggaaggcatatatacagtgagttatctaaattctaa 303

                                                                       
Query: 301 catcctgcatattacagaccatgaggacactctcagaaagatattttgaggaaaatcttc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 302 catcctgcatattacagaccacgaggacactctcagaaagatattttgaggaaaatcttc 243

                                                     
Query: 361 ccttccagaaagatttgacaaaagcaaggcggttgagaaaac 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccttccagaaagatttgacaaaagcaaggcggttgagaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space:   311256
Effective search space used:   311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)