NNNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCAATTCCACAAGAGTCTTCACAGTTCCAGTTTAGAAATA
TATGAGAGAATGTGTGTTCAGAGATCTCAGAACACCTAGCATCCATGGTG
CTGGATATTTTGCAATACGTGTACCATCCATCTAAGTCACAGTTTGTCAA
TGCTAAGCTTGTTTTCCCTTTAAATTTTCCACTTGTGGTGTACAACACTT
ATGACACAGGGTACTTTTGCAGAAGTGGAGTGATACTCCCTGAGACTTGC
CTGAGAACTAAGCTGGGACTCTGCCCCTACAATGAATGATAGCAGCCTTG
CATCAGCAGGACCTACACTGTCTCAGAAGAACACCAACACTTTTTATTCT
CAATATATTACTTCCTTAGTGAAACCCCCAGTTGAGCTTCTGTGAGGTTT
AGTGCTGATTAAGCCTTTATTGTTTAAAAAGAGGCCTGTTTCTTGAGCAC
TTCTACGGGGAGTTGGGAAGGCTAGGGCCCGCACAATCCTTACTGATTCT
AGACCCTTTGTTTCTAATGAAAAGAAGCTGCTAAGTTGGTAACTGCATGA
ATTATTGTTTTCTTAACATAAAAACTTGATTTAAAGCTAACCCCTCTTAA
GAAAGGAAAATTTGGAAATTTTTAAGTCCCCCATCCATGTTAATTGTGGT
TAACCCGTCTCCTCTCTTATAATACTTATGCTTCTATAAAAATTATTGTC

NNCCCGATGATGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTGTAGTTTGTGGTGATCC
GATAGTATGCATGAGATTATTTCAGTCTTCTCGTATCAGTTGAGGCATGT
TTTGTGTCTGATTATATGGTCAATTTTGGAGAAGGTACCATGAGGTGCTG
AGAAGAAGGTATATTCTTTTGTTTTATGGTGGCATGTTCTGTAGATATCT
GTTAAATCCATTTGCTCCATAACTTCTGTTAGTTTCTCTGTGTCTCTGTT
TCAGTTTTGTCTCCATGATCTTTCTCATTGGTGAGAGAGGGGTGTTGAAG
TCTCCAACTATTATTGTGTGTGTATCAATGTATGTTTTGAGTGTTAGCAA
TGTTTCTTTACTTATGTGTGCACCCCCCCACTTGTTCTTATTGTGTTTTG
TACTGTTTTTTTTATACGTTCACTGTATCATTTTGTTATTTTTTTTCTTG
TTCTCTCCTCTCTTACTTTTTTTATTTCTTTTTTTTTTTTTTCTCTCTTT
TTCTTTTCTTTTTTCTTTTCTCTTTCTTTTTTCTCTCCTGCTTCTTCTTT
TCCTCCTCTTTTTTATTTTTTTTTTTTTCTATTTCCGGTTTTCCCCTCTG
ACTGATTTTTTTATTTACCTTCTTTTATTGCTTGTTCTCCCTATTTCTTC
CTTTGTTATCTTAGCCTTGTCCCTTTTTTCTCTTCTTGTTCTTTTCTTTT
CTCTTATATACGCCCCTTTTTCTTTTTCCTTCTTTCAN

Query= MSMg01no466_h23.b1 MSMg01no466_h23.b1 CHROMAT_FILE:
MSMg01no466_h23.b1 PHD_FILE: MSMg01no466_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:00 2005
         (438 letters)



>mm_chr5_50962586_50963423
          Length = 838

 Score =  816 bits (422), Expect = 0.0
 Identities = 434/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtcttcacagttccagtttagaaatatatgagagaatgtgtgttcagagatctcagaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gagtcttcacggttccagtttagaaatatatgagagaatgtgtgttcagagatctcagaa 579

                                                                       
Query: 61  cacctagcatccatggtgctggatattttgcaatacgtgtaccatccatctaagtcacag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 578 cacctagcatccatggtgctggatattttgcaatacatgtaccatccatctaagtcacag 519

                                                                       
Query: 121 tttgtcaatgctaagcttgttttccctttaaattttccacttgtggtgtacaacacttat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 518 tttgtcaatgctaagcttgttttcccttcaaattttccacttgtggtgtacaacacttat 459

                                                                       
Query: 181 gacacagggtacttttgcagaagtggagtgatactccctgagacttgcctgagaactaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gacacagggtacttttgcagaagtggagtgatactccctgagacttgcctgagaactaag 399

                                                                       
Query: 241 ctgggactctgcccctacaatgaatgatagcagccttgcatcagcaggacctacactgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctgggactctgcccctacaatgaatgatagcagccttgcatcagcaggacctacactgtc 339

                                                                       
Query: 301 tcagaagaacaccaacactttttattctcaatatattacttccttagtgaaacccccagt 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 tcagaagaacaccaacactttttattctcgatatattacttccttagtgaaacccccagt 279

                                                                       
Query: 361 tgagcttctgtgaggtttagtgctgattaagcctttattgtttaaaaagaggcctgtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgagcttctgtgaggtttagtgctgattaagcctttattgtttaaaaagaggcctgtttc 219

                             
Query: 421 ttgagcacttctacgggg 438
           ||||||||||||||||||
Sbjct: 218 ttgagcacttctacgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)