BAC Information

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BAC

Clone NameMSMg01-466J02
Chromosome5 (Build37)
Map Location 132,168,613 - 132,168,742
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J02.T7 (MSMg01no466_j02.b1)MSMg01-466J02.TJ (MSMg01no466_j02.g1)
ACCAG550484AG550485
length940800
length of high quality
(start - end)
130 (73 - 202)308 (80 - 387)
definitionCHROMAT_FILE: MSMg01no466_j02.b1 PHD_FILE: MSMg01no466_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:06 2005CHROMAT_FILE: MSMg01no466_j02.g1 PHD_FILE: MSMg01no466_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATCTACAACTGCGTTCCTCATACGACTCACTATTTTCAGAGGATCCGC
GGAATTCTAAGTATTTTCCCTCCTCTCCCTGCCCGCGTATCACTCTGGCC
TGTATTAATAACTTATATTTGTACAGTGCTTTAAATGTTTAAGAGTGCTT
TCATGTGCATTATTCATATGCAACAAGCACTTCCTGAGGGCATGAAATGG
GCTTAGAGCTTCCAGAAAAAAAAATCCCATTTAGGACTGCGGCTATAACT
CTGTGGTTGGGTACACGCCCACTATGCACCAAGCCTGAGGTTCCAACCCT
AATGCCAGAAGAGGAAGAGACGTTTAAGGGAAGGGAAGGTAAGCCAAGCT
CCTTCCTTCACCTTCTCATCCCCTTTCCCTCCTTTCCTCCTATATTTCTA
ACTATTCCCCTTTATCAATCTATCGTGCTTTTTCCCCCTCTCTTCCCTGC
TTACCCCTCCTTCTTACGCCCTATCCCCCCCTTTATTATTCTCTTTCCTC
CTTCCTTTTTCCCTTCTTACCCCTCCCTCTCCTCTCATCTTTCTACATCT
TATTCTTTACTTATCCGTTCCCGACTCTCCTACCCTCTATTCTGCCATTT
CTCTCTCTCTGTTATTTCCCCACAGTATTACTCTTTCCTCCTCTTTTCTC
CCGTTTATTTCCCATTGTTTTTCTTCCGCTTCTTTTCTAANTACTGTTAT
ATACATTCTCTTTCCCACCCCCTCCCACTCTTCTTTTTTTTACTTCTATC
CGCCTTTTCCACATATTCCACTATTATACCTTTGTCCTTCTCTTATTCTC
CTCCTCTCTTCCATTTCGCTAGTTTTAACTCCTTGTTACCCCCACTCTTA
TATTTTTCTATTATACCCCCGCCATAACCACCCTCATATAACTCCATCCC
CCCTATTTCTCTTCACCGTATCTTTTTTTTGTCTCCGCTG
CTTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATGAGCTGTGAAAAGGTG
TTTGTCAGGATTATTATCCAGGAGATAATAACTGCTATCTCGAGTACTTA
CTGGTTGGTCACAGCATTTTAACACTGCTTTTGTTTCTGTTCTGGTGCTA
TGATCCAATACTCAGAACAAAAGCAACCTAGAAAAGGGAAGAGTTTATGC
TGCTTATAATTCCAGGTCATGGTCTGTTAATGCAGGAAGGCAAGTCAGGA
AACTGAAGGTAGGCCTTCTTGCTGATTCGTTCAGCATTGTCACTGACCAA
GCACCAAGGAACTCACTTCACAGAGAGAAAGTTGAGCAGGAACCATGGAG
GATGCTGTTTTCTGGCTCACTTGCCACCGCATGATTGTTGATTTAAAACC
CCTTAACTAGTCAGTGATGCCTCCCACCGTGGAATTTGTCCTTTTTTATT
CTATATCTAATCTACACACCCCTCTACATTTTGCCCCTTCTGTTGTCCAT
GTTTTTTTACCTGTATTTTCCCTCTTACTTTCCCCTATATTTCCTCCCAA
TTTCTCTCTTATATTTTTTTATCTCACTCTCCCCTATACTCTATATCTAT
TCCTCTTCTCTCCTTGTCTAACTCTCTATGTCTTCCCTCCATTAACTGTT
CTCTTTTTCTTTCCCTCTCTCCATTTCTTCATCTCTCCCACTTTCACTAC
ATATACTTATTCTCATCCCCCCGCCTCCATACTAACTCTCTTCACCTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j02.b1 MSMg01no466_j02.b1 CHROMAT_FILE:
MSMg01no466_j02.b1 PHD_FILE: MSMg01no466_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:06 2005
         (130 letters)



>mm_chr5_132168413_132168942
          Length = 530

 Score =  252 bits (130), Expect = 8e-72
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctccctgcccgcgtatcactctggcctgtattaataacttatatttgtacagtgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctccctgcccgcgtatcactctggcctgtattaataacttatatttgtacagtgcttt 260

                                                                       
Query: 61  aaatgtttaagagtgctttcatgtgcattattcatatgcaacaagcacttcctgagggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtttaagagtgctttcatgtgcattattcatatgcaacaagcacttcctgagggca 320

                     
Query: 121 tgaaatgggc 130
           ||||||||||
Sbjct: 321 tgaaatgggc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)