BAC Information

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BAC

Clone NameMSMg01-466J18
Chromosome5 (Build37)
Map Location 63,032,062 - 63,032,501
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J18.T7 (MSMg01no466_j18.b1)MSMg01-466J18.TJ (MSMg01no466_j18.g1)
ACCAG550516AG550517
length769756
length of high quality
(start - end)
440 (75 - 514)415 (80 - 494)
definitionCHROMAT_FILE: MSMg01no466_j18.b1 PHD_FILE: MSMg01no466_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:09 2005CHROMAT_FILE: MSMg01no466_j18.g1 PHD_FILE: MSMg01no466_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGNAAATGC
GCGGAATTCATCAAGCTTGCCAAGGAACCCTGGACAAGCAAGATGGATCC
TGAACACACAAATCCAACGTAAGCTGGCTAGGAAAGCGAGACAGGATTTA
GAAAAGCAGACTAATGACCAAAGTTAGTATGCGTGACACAGGTCACCTTA
GAAATGGTCTCATTAATACAATCAGCAGAAAGCATGCAGAGCAGAAGCAT
GGAAGAAATCATTTATGATTCTCTAAGTTTAAGAGATAAAAATCACTATA
CTGTGTGATTTTACTATTTATTCTATAATTTCTTTGGCTTTAAATGCTTC
CTTTGAAACCCACTGGCATAGCAAAGAGTGTTTTGGTTTTAGTAAATATT
AGTCACTGTTTCCTCAAAGTTTAAGGTGAGATTAACATGTTCTGCATGTA
CACATCAGGTTTCAGAGGTGCCCCAGGCCTTTATCAGTCTCTTTTACTTC
AAATAGGAACTTGAACGCACACAACATATGCATTTACAAAAGTTTTGTTT
TCCAGTCTTTAGAGACTAACTCTACTCACTTGAGGGTCCCTTCACCTGGT
TATAAAGCTATTTCCCACGCCCCTTTTGTTTGATATGCGCTTCCTTTACC
CGTTTTATACAATATTTGGGCTTTTCCTTTCTATGTCAAATTACCCCCAC
TTAGGGTCTCTACCCCCTTTCTCGTGCTTGTCCGGGCTACTATTTTCTCC
CATTTTTTTTTATCCCCTG
NTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTATCCCCATGGATGGACCTGGAGGGCTTCCTCCT
GGATGGGGGATCACATTTTCTTAGATACTTCACCAAAAGGATTCTCTTGA
ACATTGGAAATTACTCCCTCCCTCGCATCCCCTACTTATCCGTCTATTTT
TTTTAAAAGCCTGTCATTCTTAAATAAAATTAAACCTGATTTCGTTCATT
CCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j18.b1 MSMg01no466_j18.b1 CHROMAT_FILE:
MSMg01no466_j18.b1 PHD_FILE: MSMg01no466_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:09 2005
         (440 letters)



>mm_chr5_63031862_63032701
          Length = 840

 Score =  820 bits (424), Expect = 0.0
 Identities = 436/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaccctggacaagcaagatggatcctgaacacacaaatccaacgtaagctggctaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gaaccctggacaagcaagatggatcctgaacacacaaatccaacgtaagctagctaggaa 260

                                                                       
Query: 61  agcgagacaggatttagaaaagcagactaatgaccaaagttagtatgcgtgacacaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgagacaggatttagaaaagcagactaatgaccaaagttagtatgcgtgacacaggtc 320

                                                                       
Query: 121 accttagaaatggtctcattaatacaatcagcagaaagcatgcagagcagaagcatggaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 accttagaaatggtctcattaatacaatcagcagagagcatgcagagcagaagcatggaa 380

                                                                       
Query: 181 gaaatcatttatgattctctaagtttaagagataaaaatcactatactgtgtgattttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatcatttatgattctctaagtttaagagataaaaatcactatactgtgtgattttac 440

                                                                       
Query: 241 tatttattctataatttctttggctttaaatgcttcctttgaaacccactggcatagcaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttattctagaatttctttggctttaaatgcttcctttgaaacccactggcatagcaa 500

                                                                       
Query: 301 agagtgttttggttttagtaaatattagtcactgtttcctcaaagtttaaggtgagatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagtgttttggttttagtaaatattagtcactgtttcctcaaagtttaaggtgagatta 560

                                                                       
Query: 361 acatgttctgcatgtacacatcaggtttcagaggtgccccaggcctttatcagtctcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgttctgcatgtacacatcaggtttcagaggtgccccaggcctttatcagtctcttt 620

                               
Query: 421 tacttcaaataggaacttga 440
            |||||||||||||||||||
Sbjct: 621 cacttcaaataggaacttga 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)