BAC Information

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BAC

Clone NameMSMg01-466J20
Chromosome5 (Build37)
Map Location 31,040,877 - 31,041,115
singlet/doubletsinglet
Overlap geneDpysl5
Upstream geneLOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa
Downstream geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J20.T7 (MSMg01no466_j20.b1)MSMg01-466J20.TJ (MSMg01no466_j20.g1)
ACCAG550520AG550521
length773800
length of high quality
(start - end)
239 (80 - 318)104 (81 - 184)
definitionCHROMAT_FILE: MSMg01no466_j20.b1 PHD_FILE: MSMg01no466_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:10 2005CHROMAT_FILE: MSMg01no466_j20.g1 PHD_FILE: MSMg01no466_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTATTACTCTCTATTTTTTGCGGCGGAAAAGGAGTCCTTATTCAAAACA
TGCCGCGGAATCTAAAATTCCCACAAGAGCAGCGAGGCCTTCAACAGCAA
GATGGTGCATATCTTGATGTGCCAACATTTATCTACACAGCTTGCATCCC
CAGACTTCCTGATTCTGTGGCTGGAGTCTGTATTTCCTTAGCCAGTACAG
GGTTAAATTCTAAGGGGATGTGCCATGCTGGGATAAGGGCCTCCTGGGAG
GTAGGCAACATCATGAGCAGGAAGGGAGATCTTTCAGAGAAAGCCTCTTC
AGGTTCAAAATAGCAACAATTTTTTTTTCTCCAGCAACAGTGTTGCTGAA
TATCAGAAGCCCCACCGTAGGCGGTCGTTCCTAACGCATAACTGGCACAG
GGAGTATCTTGCTCAACAGAGACAGTCAAGGTTAAGGCAGCATGTCATGG
GCGAAAAGCACACACCCTGGACTCTTTCAAGTCTGTCAGATTCCTGTCAG
TGATCGTCCTACCCTAGCCTTGCATTTTGGAACTGGACTACTTTTGTCAT
TTTCCTTTTCCTGTTTTTTCCCTTCTTGGTTTATTATTTTTTTTCCCGCT
GACACTTTTTTTTCTTTTTCTCATTTCCTTTCCATTTACTTTTCCCTTTT
TCTTATTTTTTTCTCCTCTAATATCATTATTCNCCCCTTTGTTCTTCATT
TTTCCCCTTCTATTTCCTCCTTTTTTTTCTCCTTCTCTTTTTTTTTCTCC
TCCTTTTTATTTTTTTCTCTCTN
NNNNCTCTCCCAAAAACAANNAAANCCGGGCGNCCGCCTGTTTCCNCAAA
TTTANGTGAAACTATANAATTATCCGCGAAATTCCTTGCCTCTCTTCCTC
CTCCTCTCCACGCCCCATCCCTGTGTGTGAATCTGTGTAAGCCAGAGGAC
AACCTCAAAAATCTTTCCTCAGGTACCACACAGGTCACGTTGATGTGCTT
GCTGGTGGGGGGGGTGGGGGTGGGTGGTGGGGGGCTCTNANANNNNCNAN
NCNCTGNCATACCAGCGCTGGAATTGAAGGTTTGGTTCTTTGGGGGTGTT
TTGTTGTGTTTTTTTGTTTTTTGGTGGGGGGGGNCCTNNNNNNNNNNNNN
NNNNNNNNNNNNNAACNNNNNNNNNNNNNCCNNNAAAAAAAAAAAACNNC
NNNNNNANAAAAACCCCCCCACAAAAAAAAACCCCCAAACCCAAAAAANC
CCCCCCCNCCNCNNCCACACCACCCCCACCCCCCCAAACCACACCCCCAA
CCANCNNCCCACCCACACACCCCNCACACCCACCCCCAACCAACCCCCCC
CCACNACACCCCNACCCCCCCCCCCCCCNCCCCCCCCCACCCCCCCCCCC
CCACCCCCCCCACCCACAACCCCACCCCCCCCCCCCCCCCNCACACCCCC
CACACACCCAACCACCCCCACCCCCCCCCACCCCCCCCCCACCCCCCACC
AACCCCCCAACCCACCCCACCCCCCAAAACACACACCCCCACCCCCCCCA
CACCCACCACCCCCCCCCCCCACCCACACCCAAATATATATTGTTTGTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j20.b1 MSMg01no466_j20.b1 CHROMAT_FILE:
MSMg01no466_j20.b1 PHD_FILE: MSMg01no466_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:10 2005
         (239 letters)



>mm_chr5_31040677_31041315
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcgaggccttcaacagcaagatggtgcatatcttgatgtgccaacatttatctacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagcgaggccttcaacagcaagatggtgcatatcttgatgtgccaacatttatctacaca 380

                                                                       
Query: 61  gcttgcatccccagacttcctgattctgtggctggagtctgtatttccttagccagtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcttgcatccccagacttcctgattctgtggctggagtctgtatttccttagccagtaca 320

                                                                       
Query: 121 gggttaaattctaaggggatgtgccatgctgggataagggcctcctgggaggtaggcaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 319 gggttaaattctaaggggatgtgccatgctgggataagggcctcctgggagggaggcaac 260

                                                                      
Query: 181 atcatgagcaggaagggagatctttcagagaaagcctcttcaggttcaaaatagcaaca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcatgagcaggaagggagatctttcagagaaagcctcttcaggttcaaaatagcaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)