BAC Information

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BAC

Clone NameMSMg01-466O11
Chromosome5 (Build37)
Map Location 83,809,008 - 83,809,195
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466O11.T7 (MSMg01no466_o11.b1)MSMg01-466O11.TJ (MSMg01no466_o11.g1)
ACCAG550741AG550742
length733764
length of high quality
(start - end)
122 (374 - 495)190 (324 - 513)
definitionCHROMAT_FILE: MSMg01no466_o11.b1 PHD_FILE: MSMg01no466_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:35 2005CHROMAT_FILE: MSMg01no466_o11.g1 PHD_FILE: MSMg01no466_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCCCACACCTTTTTTGCGNAAAAAGGAAGCATATTCCCAACAGGAGC
CGCGCAATTCATTTTTCCCCGAAACTGAACAGAGNATCCTGTCTCATAAA
ACAAACAAACAAAAATTTTAAAAAATTCCATCTTCATTATTTCAATTATC
TGCCAGAATAGTTATTCTTTATAGCATTTATTTATAAAAGTATGTACATT
GAAAAGTGACTTATATGTACATATTGCAAATATTGTCCTGGTGAATATTT
GAAAAACATTGTAATGATAGAATAAATTAAGAATCAGTTGAAATTTTCAT
TGACTCTGTAGATTGTTTTCATTAATGTGGACATTTTCACTATGTTAATT
TTACAGATCCATGATCATGGAAGATCTTTTCATCTTCCGATATATTCTTC
ATTCTTTTCTTTCCTTTTGTTTCAATTTTTATTATTTTATTTATTTACAT
TCCTGTTAGTACAACCCATCCCCTCTCAATAAAATTTTCCTGGTTTCAAT
TGTAAAATGCTTATAACTGTGTATAATATTTTGCTTATGCTCATTTGCCT
ATTACTTTCAACCATTCCCACCTTCCCTGTCTCTGTGATCCTTCTTCCCG
ATATCATTTCCCTGCCTTTCCCGACTGCCTAGCATCCCTTCTGTTGTATT
TTACCTCCCCTATGTTGCCACGTAATGACCTCCTCCTTTTTCCACCCTCC
GTACCACGTTTTCCTTTTTCACCTTTTTTTTTG
NNCCACGATGATAGGGGAGGCCTGGGGGNCGCCTGGTACACAAATTTAGG
NGACACNANAGAATGACTAAAACAAGGCTTTGNGCTGTAGCATCAAAGTA
TGCAGAGTGGTCAAATCTTCTACCGATGGTGTATGTGCAATCCAGCTCTT
CATTAGATTTATAGTGCTTTTGCTTAGGGCAGCAAAGACAAATACAACCA
TTAATTATGAAGTCAGACTGCCTATCTGCAGCATCTGCCTATTTATAGTA
TAATGAACTTCTAACAGAAAGCTTCAAATATAATCCTAAAGATCTTATAA
TTAACACCAAAATTATATTTATTAGTTCTTTAACACTGCCGAACAGCACA
ATGTCTCAAGAGGAGGTGTCTCACTAACTCAAAGCTAAGACCACTTACTA
GAATTTGGTGGCCAGAATATAAAGATGCGTAGTTACTTTTAAATGTTAAA
TAAATTAATTAAATTAAAAGTAAAATGTTATTATTGGGAAAGGGATATGT
TACACTATGTCTAGTTTTATTTTACTAAGTGTTTTCCTCTCTCACATTTG
CCATGCCTATCTCATAAAGCCCCCATAACCTCCCCCCCCCCTCCCTTAAC
TATCTTTTCTCCTTTTTCTTGGCCCATGAGTGCTCTCCTGTTTTTTTCTT
CATACACAAGCTTCCCTTATTCCTACTGCTCCTCCTCTTTCCCTTTCTCT
TTTTCCTATTTTCCCTACTCTTCTCCCCCTTTTTTTTTCCCCTCATATTC
ATCTTATGTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_o11.g1 MSMg01no466_o11.g1 CHROMAT_FILE:
MSMg01no466_o11.g1 PHD_FILE: MSMg01no466_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:35 2005
         (190 letters)



>mm_chr5_83808883_83809472
          Length = 590

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctttaacactgccgaacagcacaatgtctcaagaggaggtgtctcactaactcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agttctttaacactgccgaacagcacaatgtctcaagaggaggtgtctcactaactcaaa 254

                                                                       
Query: 61  gctaagaccacttactagaatttggtggccagaatataaagatgcgtagttacttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctaagaccacttactagaatttggtggccagaatataaagatgcgtagttacttttaaa 194

                                                                       
Query: 121 tgttaaataaattaattaaattaaaagtaaaatgttattattgggaaagggatatgttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgttaaataaattaattaaattaaaagtaaaatgttattattgggaaagggatatgttac 134

                   
Query: 181 actatgtc 188
           ||||||||
Sbjct: 133 actatgtc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)