BAC Information

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BAC

Clone NameMSMg01-467F03
Chromosome5 (Build37)
Map Location 83,624,548 - 83,624,990
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F03.T7 (MSMg01no467_f03.b1)MSMg01-467F03.TJ (MSMg01no467_f03.g1)
ACCAG551058AG551059
length1,069730
length of high quality
(start - end)
---444 (78 - 521)
definitionCHROMAT_FILE: MSMg01no467_f03.b1 PHD_FILE: MSMg01no467_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005CHROMAT_FILE: MSMg01no467_f03.g1 PHD_FILE: MSMg01no467_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCTATGCAGTAGTGTCGTGGCTCTCTCCGTTCACTCCTGTCGTACCC
TACTGGCTGCCGACTCTGTTCGTTATTAAATATTGGAGTGAGTCGCGGAN
GCGGTGGCGTGTAGTGGAAATGGTGATTTGCAGGGAGTTTAGTGCGGGGA
GGTAAGATGTAGTCTGGAAGAGTGTCACGAGGTAGACAGTATCAATATGA
CCGTCCGGGGTAGTGACGTATATTAACGGCTGTATTGCTTTATGGACGCC
GGAATCGCGTAGTGCTAATTCGACTAGCGCACCGCTATAGAGTGCATAAT
ATATTGTAATTACGTCGGGCGAGAAAAATAAATAATGTCTGATTGGCAGG
TACAGAGTATCCACGTATAACATAGAAATATTACCGCTTTCTCGTTTTGG
TCCGTATTTTAGTAATAGAGAGAAGTGAAGGCGACGATCTCCATTTGGGC
GGAATGATCCAGCTGAGTACCAGGATGTGTGATGAGTTCCTCATTGCACG
ACTCAAAGCACGTTGTACGGCGAAAGACGATTGACTTACGTGCGCGTTTT
ACACCTATATATCTACCCTTCTGTCGCTTGAACACTTGATCTATCGATGG
ATAAGATTGCGAGTCGCCCCCCATCCGGTACGTGTTAGACTCTTTGAGTA
ATCGATATACCACTAACATCCGATGATGTGTGGCATTATCATTCGCCCCG
TTGCGATATCCCGCGTAGCATCGATATACAAGTACGAGGATGACCTTTAG
TAAGACGAACGTTGATACTGTATGCTGGTGTTATGCCCCCATTCGCATTT
ACAGGATGGTCTATGTCATATTCACGCCAGTGTTCTACCGACGCTACATC
TAGCGCTATAGCGCTGTAGTAACTACCTACCTTGCGCGCGACTTACTGCA
TTATGTACTCGATGTTTGCAGAACGATCGTGTGCCCTCGTACTTCCTATA
GTTTATTCGTGCACGGATAAACGTAAGCAGGTGGAGATTAGGTAACAGAT
AAGGTGTCTTCATCTTTTCACCGTCATGATTTGTTGCCCGTCACATGCGT
GGCACACGATCCTCTAGTN
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGTTCTCCTTTCTCCACTGA
GTAATGTATTTTTCTCTACACCGAATACAATTTCAGTACTATATCGACTA
TTTACAAACTAGTTTAATGGCATCATAAAAACATTCACAAAATGGCACTA
AAGGTCAGCAATAAACTGGCTGAATCTCCCTGCCTCTTAAATATATGGGT
GACCAGCATATCCCCCCAAGGATCAGTGTTTGAAAATTAGCTGCTGAGCA
TGCACTGCAGTTAATCCTCATAACTGTTTAAAGATGATGCATCAGCAATG
TGATAAACCATACTCTTGAATAATAAACCCTTCTCAGGAGCAAATCAGTA
GGTAATGATGTCATGTAAAAAGGCTGTAGACACAAGAATTATAAGACCCC
TTCGACTGGCTTGCATCTAACAATGTCATACAGCAATTAATCATTTTCCT
GTGAATTTTAGAATAAATGCCGTTAGCAATTGTGCTAATAATTTTTAAAT
CAGTATCAGACATTCCAGTAGGAAAAAGACTATTATAGTCTGTCTCTCTC
CCATACTTGCTTCCCTAGTAAAACTAACACACTACAACGCGGATTTCCTT
TTTACTAATCTCCAATATCAACTTTTCTTTCCCCCTAACCTACATCTCCT
GGCTTTTATCGGACCCTAACTTCTTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f03.g1 MSMg01no467_f03.g1 CHROMAT_FILE:
MSMg01no467_f03.g1 PHD_FILE: MSMg01no467_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:09 2005
         (444 letters)



>mm_chr5_83624348_83625191
          Length = 844

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgttctcctttctccactgagtaatgtatttttctctacaccgaatacaatttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgttgttctcctttctccactgagtaatgtatttttctctacaccgaatacaatttcagt 584

                                                                       
Query: 61  actatatcgactatttacaaactagtttaatggcatcataaaaacattcacaaaatggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actatatcgactatttacaaactagtttaatggcatcataaaaacattcacaaaatggca 524

                                                                       
Query: 121 ctaaaggtcagcaataaactggctgaatctccctgcctcttaaatatatgggtgaccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctaaaggtcagcaataaactggctgaatctccctgcctcttaaatatatgggtgaccagc 464

                                                                       
Query: 181 atatccccccaaggatcagtgtttgaaaattagctgctgagcatgcactgcagttaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atatccccccaaggatcagtgtttgaaaattagctgctgagcatgcactgcagttaatcc 404

                                                                       
Query: 241 tcataactgtttaaagatgatgcatcagcaatgtgataaaccatactcttgaataataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcataactgtttaaagatgatgcatcagcaatgtgataaaccatactcttgaataataaa 344

                                                                       
Query: 301 cccttctcaggagcaaatcagtaggtaatgatgtcatgtaaaaaggctgtagacacaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cccttctcaggagcaaatcagtaggtaatgatgtcatgtaaaaaggctgtagacacaaga 284

                                                                       
Query: 361 attataagaccccttcgactggcttgcatctaacaatgtcatacagcaattaatcatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attataagaccccttcgactggcttgcatctaacaatgtcatacagcaattaatcatttt 224

                                  
Query: 421 cctgtgaattttagaataaatgc 443
           |||||||||||||||||||||||
Sbjct: 223 cctgtgaattttagaataaatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)