Query= MSMg01no467_g03.b1 MSMg01no467_g03.b1 CHROMAT_FILE:
MSMg01no467_g03.b1 PHD_FILE: MSMg01no467_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:13 2005
(244 letters)
>mm_chr5_24144575_24145218
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 cgtgtggcagtgagtatccatggaatccactggtcttacactgcccatctactaagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtgtggcagtgagtatccatggaatccactggtcttacactgcccatctactaagagac 385
Query: 61 cttaggacaatggccaagcaacttggatccttccctcacggcagagttcccggtctggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttaggacaatggccaagcaacttggatccttccctcacggcagagttcccggtctggac 325
Query: 121 atggacagcgtattccaggagacattcattccattactctgagagtaagcccaggtagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggacagcgtattccaggagacattcattccattactctgagagtaagcccaggtagag 265
Query: 181 atgttaaagatgtgaagagaaggggccagaaaccctggatgggtgcatgtaggagctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgttaaagatgtgaagagaaggggccagaaaccctggatgggtgcatgtaggagctaga 205
Query: 241 gcag 244
||||
Sbjct: 204 gcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_g03.g1 MSMg01no467_g03.g1 CHROMAT_FILE:
MSMg01no467_g03.g1 PHD_FILE: MSMg01no467_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:14 2005
(330 letters)
>mm_chr5_23927529_23928257
Length = 729
Score = 600 bits (310), Expect = e-176
Identities = 325/330 (98%), Gaps = 1/330 (0%)
Strand = Plus / Plus
Query: 1 acatcatcaggaagagtagccatctgtccaatcccttttgtcttgattttgctttgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatcatcaggaagagtagccatctgtccaatcccttttgtcttgattttgctttgatgt 260
Query: 61 ttaagacaaggccctgctttgtatctctggctagtcttaaacttgagatggccctgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagacaaggccctgctttgtatctctggctagtcttaaacttgagatggccctgcctc 320
Query: 121 agccttatgagtgctcaagttagaagtatggggcactatgcaggcccgggatttgttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccttatgagtgctcaagttagaagtatggggcactatgcaggcccgggatttgttgaa 380
Query: 181 tgcaggagatagtctctcctgtgtctcatctctggagtgcaaatgacatcattgaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaggagatagtctctcctgtgtctcatctctggagtgcaaatgacatcattgaaatca 440
Query: 241 ttatactgtctgtgcaagtcaaaggcaaccacataaataacgttcaccaaggcaagtagt 300
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 g-atactgtctgtgcaaatcaaaggcaatcacataaataacgttcaccaaggcaagtagt 499
Query: 301 ccttgttaggcagaaacagggttcccctgg 330
||||| ||||||||||||||||||||||||
Sbjct: 500 ccttggtaggcagaaacagggttcccctgg 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space: 231120
Effective search space used: 231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
