BAC Information

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BAC

Clone NameMSMg01-467K04
Chromosome5 (Build37)
Map Location 140,432,158 - 140,594,238
singlet/doubletdoublet
Overlap geneA930017N06Rik, LOC100041270, Mad1l1
Upstream genePdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K04.T7 (MSMg01no467_k04.b1)MSMg01-467K04.TJ (MSMg01no467_k04.g1)
ACCAG551296AG551297
length724756
length of high quality
(start - end)
423 (73 - 495)304 (72 - 375)
definitionCHROMAT_FILE: MSMg01no467_k04.b1 PHD_FILE: MSMg01no467_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005CHROMAT_FILE: MSMg01no467_k04.g1 PHD_FILE: MSMg01no467_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,432,158 - 140,432,580)(140,593,937 - 140,594,238)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGACAACCGCNGGAA
TCACTTTGTATACCAAACAGGCCTTGAACTCAGAAATCCGCCTGCCTCTG
CATCCCAAGGGCTGGTATTAAAGGCGTGCGCCACCACACTCGGCTACAGC
CTGATCTTATGGAGACATTTTCTCCATCGAGGCTTCCTCTGCTGCGATGA
CTCTTCCTGTGTCAAGTTGACACAAAACTAGTATATAGACAGAGCACCAT
CTCCTGTTCTGCTCAGGATGTCTCTATGACATCAACTGAGTATGCATCTT
GAAGTTCGTCTTCTGTCTTTCTGTTCCCTGCATGTGGCATGGGGGCCACA
CTTCTCTGCCCACTTGTGGAGCAAGTTTTGTTGTGCCCGAGGACTTGAGC
CACTAATCCTTTTGGAAGGAATATCACCATAGGATCTTCAAGCTTGTTAC
AGTGTGCCTGGGTGGGGACAGCACCCACAGTCTGCTCCTAGAGTCATCAG
GCCAAAGAGAGTGCAAGTTGGGTTCTGGTAGGCTCTCCAGGGTCTTCCAA
AGCACATGTGGTACTCAAGACAGGTACAGGACATTTGGGTAATGTTATAG
TGGCCTCAGACGAAGGCTGTTGGTCTTAAAATCTGCCTCATTTTGTTCCC
GAAATCCCAACCACCTTCTCTGGCTACTACTTCCTGAGCCTTTTTTCACA
ATCCCTCATTTACTTATGTCTTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGACCAGCCTGCCTAGATAAACTGTCA
GGTTCCAAGTTCAGTGAGAGAGCCTGTGTCCAAGGTCAGTGAGCTGGATG
GCTCCCACGGAATGACCCCTGGACTTTGCTCTCTGGCCTCCATTCATGCC
TGTTCCCAGTATGCATACACACACTGGGACACTTTGTACTGTTCCTCCCC
ATCCTGTGTGCTTATAGCAGAATGTATAAAGAAGTTATCTGGCTTGTGGT
TCTGGAGTCCAGAAAGTCTTGTATTGGGAAGTCAAGTGTGGCAGGAGATG
GGATGGGTGAGGGGTGTGAACTGTTGGNNGTGANTTCTNTCCATGGNCCA
CCCCTAACGAGGCTTCATTTTCCTTGAAGTCTGCTAGCATTGTGTTCTCT
AGGCCCCTGCACTAAGTCTGCTACTGTTTGCAGGTCTGGCGCTGATTACA
CTCTATACCCCACTTTTATCTCTTGGTCCGATTTTCCCGAACTCCATCCC
CGTTTTTCTCTCCGCTTCCCTTCCTCCCTTTCCTTTCGCATTCGCATAAT
AACCCGCGTTATCGTCATTGCTTTTCCACCGTAATTTCTCCCACTTTTTT
ACGCTCTTTTTTTTTTTTGTTCGGTATTTCCCGCCGCCATTATTTCCTCT
TTCGCTTCCTTTTTCGCTACTGTGTCTTCGTTAATAAGTTCTCTTATTAT
CCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k04.b1 MSMg01no467_k04.b1 CHROMAT_FILE:
MSMg01no467_k04.b1 PHD_FILE: MSMg01no467_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:34 2005
         (423 letters)



>mm_chr5_140431958_140432780
          Length = 823

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaactcagaaatccgcctgcctctgcatcccaagggctggtattaaaggcgtgcgcc 60
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 201 cttgaactcagaaatccgcctgcctctgcctcccaagggctgggattaaaggcgtgcgcc 260

                                                                       
Query: 61  accacactcggctacagcctgatcttatggagacattttctccatcgaggcttcctctgc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacgctcggctacagcctgatcttatggagacattttctccatcgaggcttcctctgc 320

                                                                       
Query: 121 tgcgatgactcttcctgtgtcaagttgacacaaaactagtatatagacagagcaccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgatgactcttcctgtgtcaagttgacacaaaactagtatatagacagagcaccatct 380

                                                                       
Query: 181 cctgttctgctcaggatgtctctatgacatcaactgagtatgcatcttgaagttcgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttctgctcaggatgtctctatgacatcaactgagtatgcatcttgaagttcgtctt 440

                                                                       
Query: 241 ctgtctttctgttccctgcatgtggcatgggggccacacttctctgcccacttgtggagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtctttctgttccctgcatgtggcatgggggccacacttctctgcccacttgtggagc 500

                                                                       
Query: 301 aagttttgttgtgcccgaggacttgagccactaatccttttggaaggaatatcaccatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttttgttgtgcccgaggacttgagccactaatccttttggaaggaatatcaccatag 560

                                                                       
Query: 361 gatcttcaagcttgttacagtgtgcctgggtggggacagcacccacagtctgctcctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcttcaagcttgttacagtgtgcctgggtggggacagcacccacagtctgctcctaga 620

              
Query: 421 gtc 423
           |||
Sbjct: 621 gtc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no467_k04.g1 MSMg01no467_k04.g1 CHROMAT_FILE:
MSMg01no467_k04.g1 PHD_FILE: MSMg01no467_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:34 2005
         (304 letters)



>mm_chr5_140593616_140594319
          Length = 704

 Score =  545 bits (282), Expect = e-159
 Identities = 297/302 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaccagcctgcctagataaactgtcaggttccaagttcagtgagagagcctgtgtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 actgaccagcctgcctagataaactgtcaggttccaagttcagtgagagaacctgtgtcc 564

                                                                       
Query: 61  aaggtcagtgagctggatggctcccacggaatgacccctggactttgctctctggcctcc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 aaggtcagtgagctggatggctcccactgaatgacccctggactttgctctctggcctcc 504

                                                                       
Query: 121 attcatgcctgttcccagtatgcatacacacactgggacactttgtactgttcctcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attcatgcctgttcccagtatgcatacacacactgggacactttgtactgttcctcccca 444

                                                                       
Query: 181 tcctgtgtgcttatagcagaatgtataaagaagttatctggcttgtggttctggagtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcctgtgtgcttatagcagaatgtataaagaagttatctggcttgtggttctggagtcca 384

                                                                       
Query: 241 gaaagtcttgtattgggaagtcaagtgtggcaggagatgggatgggtgaggggtgtgaac 300
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 gaaagcctggtattgggaagtcaagtgtggcaggagatgggatgtgtgaggggtgtgaac 324

             
Query: 301 tg 302
           ||
Sbjct: 323 tg 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)