Query= MSMg01no467_m18.b1 MSMg01no467_m18.b1 CHROMAT_FILE:
MSMg01no467_m18.b1 PHD_FILE: MSMg01no467_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:46 2005
(570 letters)
>mm_chr5_12664497_12665467
Length = 971
Score = 1011 bits (523), Expect = 0.0
Identities = 559/571 (97%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 1 ctaca-tttcagctttgacaaaaggcctggtcatcttcaacttgtcaactgctttgtact 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ctacattttcagctttgacaaaaggcctggtcatcttcaacttgtcaactgctttgtact 712
Query: 60 atgagcaatgtgtaacacctggacataccatgaagcaggatgtagtgtcaggcaaagctg 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 711 atgagcaatgtgtaacacctggacatacgatgaagcaggatgtagtgtcaggcaaagctg 652
Query: 120 tcattagtgaagccaactcagccttcaaagttgtttcacgttggcaaatcatacccccaa 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcattagtgaagccaactcagctttcaaagttgtttcacgttggcaaatcatacccccaa 592
Query: 180 gcagtatttctgtgttttggcaaagtaataaccttgaattctattagtcactagaaaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gcagtatttctgtgttttggcaaagtaataaccttgaattctattagtcactagaaaaaa 532
Query: 240 ccaattctatggaggaactgacagttaaatattagcctgcttactctttaaactgcctgt 299
|||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 531 ccaagcccatggaggaactgacagttaaatattagcctgcttacgctttaaaatgcctgt 472
Query: 300 gattgaaaattaaactggaaacatatttgagacctcaaatttctagagaaccctgacaat 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gattgaaaattaaactgtaaacatatttgagacctcaaatttctagagaaccctgacaat 412
Query: 360 tcagataaagtaacctaattaccttctagttataattttttaaattttgcttactttgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcagataaagtaacctaattaccttctagttataattttttaaattttgcttactttgct 352
Query: 420 ttcttatttgcttctgcaagatgtaagttaaaaatatgttacatttgttttagaatttct 479
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 351 ttcttatttgcttctgcaagacgtaagttaaaaatatgttacttttgttttagaatttct 292
Query: 480 gatgagaattaaccttttcccttgagattcataaaataatgcaggcagatatgtttatta 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 291 gatgagaattaaccttttcccttgagattcataaaataatgcaggcagatgtgtttatta 232
Query: 540 tcacatgtatgcatattggacacatattaac 570
|||||||||||||||||||||||||||||||
Sbjct: 231 tcacatgtatgcatattggacacatattaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_m18.g1 MSMg01no467_m18.g1 CHROMAT_FILE:
MSMg01no467_m18.g1 PHD_FILE: MSMg01no467_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:46 2005
(422 letters)
>mm_chr5_12527059_12527880
Length = 822
Score = 688 bits (356), Expect = 0.0
Identities = 398/420 (94%), Gaps = 14/420 (3%)
Strand = Plus / Plus
Query: 1 atgtgtcagtggagcaatgtctttgttgtaaatcagttaataagaattcttatctctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgtcagtggagcaatgtctttgttgtaaatcagttaataagaattcttatctctgtg 260
Query: 61 ttagcaaacgagaacactattctgtaggcaatagggagttattcaatattatttgaggta 120
|||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttagcaaatgagaacactattctgcaggcaatagggagttattcaatattacttgaggta 320
Query: 121 taaaggaacaaggtgaatatatttagctactgcttgaagaatgcatctggtttgagaaat 180
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 taaagggacaaggtgaatatatttagctactgcttgaagaatgtatctggtttgagaaat 380
Query: 181 atttgtgattaggaagcctgtcatatccaacatagtagaaataaatacatggcattatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgtgattaggaagcctgtcatatccaacatagtagaaataaatacatggcattatat 440
Query: 241 ttaggagctatttaaaagagaatctatttatacacatctacagtataaaaattactatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggagctatttaaaagagaatctatttatacacatctacagtataaaaattactatta 500
Query: 301 ttttattgatatataaaatattgatattaagatagaccagctcaacacataatcatgggc 360
|||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 501 ttttattgatatat-------------taa-atagaccagttcaacacataatcatgggc 546
Query: 361 ttattcatatctacaatatttaatgcagtagttacatgctgttatgttgaaatatgacta 420
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 547 tcattcatatctacaatatttaatgcagtagttacatgttgttatgttgaaatatgacta 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
