BAC Information

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BAC

Clone NameMSMg01-467M24
Chromosome5 (Build37)
Map Location 48,902,972 - 48,903,106
singlet/doubletsinglet
Overlap geneKcnip4
Upstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467M24.T7 (MSMg01no467_m24.b1)MSMg01-467M24.TJ (MSMg01no467_m24.g1)
ACCAG551431AG551432
length731792
length of high quality
(start - end)
581 (41 - 621)140 (71 - 210)
definitionCHROMAT_FILE: MSMg01no467_m24.b1 PHD_FILE: MSMg01no467_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:47 2005CHROMAT_FILE: MSMg01no467_m24.g1 PHD_FILE: MSMg01no467_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAACAGATGACTCTTGAATAGCTAAGAAGCACTTAAAGAAATGTTCAAA
GTCCTTAGTCATCAGGGAAATGCAAATCAAAATGACCCTGAGATTCCACC
TTACACCATTCAGAATGGCTAAGATCAAAAACTCAGGTGATAGCACGTGT
TGGTGAGGATGCAGACAAACAAGAAGACTCCTCCATTGCTGGTGGATTGC
AAACTTATACAACCACTCTAGAAATCAATCTATCATTTTCTCAGAAAATT
AGAAATTGACCTACCTGATTACCCAGCTATACCATTCCTGGGCACATACC
CAAAGATTCTCCTCTATATTTCTACAAGAATATGCATTCCATTATGTTCA
TTACAGCTTTATTTGTAATAGCCAGAAACTGGAAACAACCCAGATGTTCC
TCATGCTAATAAGGAATACAGAAAATGTGGTTCTTTTACACAATGGAATA
CTATTCAGCTTTGAAAAACAAAGACATTAAAATTTTGCAGGGAAATGGAT
GGAACTAGGAACAGAAACCCGAAGAAGTTAACCAAGAAGCAAGGCCCCTG
TAAGGATGCTTGACTCTCACTTAGAAGGGGGAACAAAATAGTCCCAGGAT
GCTTGGGGCAAGGGAAAGAAGGGAGGGAGAGAACTTAATTTGCTAATTTT
TTTTCTCTTTCCTCTTCCCTATTTTCTTTTG
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATTTACAAGATCAGGCTTTATGTGGGAAG
GGAAAGATTCCACCCCACCCCACCCCCCGCCCCCAACTACTTGAAACTGT
CAATGTTACCTCTGTTGCCCCTGAATTATTTGGTAAAATCAACAAGTTGT
TAGTTTAGATTAAGCTCAAGAATTTTAAGACTGTAGTCCCCACTTCTTCC
TATTTCGTTCTAATGGCCTTTGAACGGACTGTTAACTGTGCCTNNNNNNN
NNCAAATTACCCCTTTAAAAGCCCATTTGGNNNNNNNNTTCCCCNNNNNN
NNACACCNNNNNCNNNCTCNNNAATTTATTTTATANNNNNNNNNNNNNTA
AAAAAATTTTTCTTTTTTAAAAAAAAAANNNNNNNNNNNNNNNNTNNNNN
NNNNNNTNNNCCGNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTT
TTTTGTTGTAGAAAATANTTTTTTTTTTTTTTTTTTATATTAAAAAAAAA
TATTGTATTTTTTTTTTTTTGTGGTGGNNTNNNNNANTTTATTTTTTTNN
NNTTTNNTTTTNATTTNANANTTTTATTTTANTATATTTTTTTTAATTTT
TTTTTATANATNNTTTTTAAAAGTTATTTTTTTATTTTTTTTTTTTNTTT
TTTTTTTTTTAATATTTTTTTTTTATATATANATTATTTTTTTTTAATAA
NTTTTATTAGTTGTTTTTTGGTGTAAGGGGTATATATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_m24.g1 MSMg01no467_m24.g1 CHROMAT_FILE:
MSMg01no467_m24.g1 PHD_FILE: MSMg01no467_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:47 2005
         (140 letters)



>mm_chr5_48902772_48903306
          Length = 535

 Score =  228 bits (118), Expect = 9e-65
 Identities = 133/140 (95%), Gaps = 5/140 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttacaagatcaggctttatgtgggaagggaaagattccaccccaccccaccccccgc 60
           |||||||||||||||||||||||||||||||||||||||   ||||||||  ||||| ||
Sbjct: 201 tatttacaagatcaggctttatgtgggaagggaaagatt---ccccaccc--ccccctgc 255

                                                                       
Query: 61  ccccaactacttgaaactgtcaatgttacctctgttgcccctgaattatttggtaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 ccccaactacttgaaactgtcaatgttacctctgttgcccccgaattatttggtaaaatc 315

                               
Query: 121 aacaagttgttagtttagat 140
           ||||||||||||||||||||
Sbjct: 316 aacaagttgttagtttagat 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 535
Length adjustment: 8
Effective length of query: 132
Effective length of database: 527
Effective search space:    69564
Effective search space used:    69564
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)