BAC Information

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BAC

Clone NameMSMg01-467O09
Chromosome5 (Build37)
Map Location 14,631,774 - 14,632,069
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467O09.T7 (MSMg01no467_o09.b1)MSMg01-467O09.TJ (MSMg01no467_o09.g1)
ACCAG551497AG551498
length730730
length of high quality
(start - end)		296 (319 - 614)431 (73 - 503)
definitionCHROMAT_FILE: MSMg01no467_o09.b1 PHD_FILE: MSMg01no467_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:54 2005CHROMAT_FILE: MSMg01no467_o09.g1 PHD_FILE: MSMg01no467_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CTCAGTTTTTCCACACCATGCGTGACTGGACGCTGCCATTCTTTCCCCCA
TGATGATTGTGGACTGAAACTCAGAACCTGTAAGCCAGCCCCAATTATAT
GTTGTCTTTTGTAAGAGTTGCTGTGGTCATAGTGTCTCTTCACAGCTATA
AAGTTCCTAAGACAAATACTATAAACTACTTTATAGATTATCTTACACAA
TTTTGAAAACTGTGTTTTATTTAATAACACAATAACAGCAATTAATCCTA
TTACTAGCTGATTATTATCTCATCATTGTATTCTCAGGTGTTCATACATC
TTTTGTCTAAAATAGAGAACATTTTGAGGAAGATTCTTTCTTAATGAAGT
CCTCATGCAGTTTCCTTTAAATAATAAAAGTGGTTATTGTTACTGTAAAA
GGAGTCCCTTTAAGTTTCTATTTTTCCTGAGTGACTGGTAAACTTCTAGC
TCAGTCCTACACTGTAACTTGACCTCTCTAGCCTTTGTTCTATGAGGAGC
TACTGAGATGTAGATGCCATCTCAAATGCTTCTCCCTGCTCTCAGCCAAT
TCTCTCTGGGTCTATAACTGTGTGTCTGGAAAAAGAAGATATATGGTTGC
TCTCTCTGTGCCTGCTGCTCCCTACAATTAATGTCAAGTTAACCGGTATT
ATTTGATGACCTTTGAACCCTTTGTCTAAA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTGTAATCCTTATAAGTATGGCCACT
GGGAATTCCATGTAAGCGTGTTTCTAGGTATAGGGAGTTAAGCCTTAATA
ATGGGGATGGGCTTGGGTGGGACTGACAGAGTCCCCAGGAGGAAGAAAAC
CAGGGTATTCCATCAGGATCTGCTTGGTAACCTGAGAATTGTGCCAAAGC
ATAAGAAAGGCCACAATAGGTAGTTTGCTACAGACCTGGCAATGAGACTC
AGGGATTGGATATGATTAGAGAGGAACGGGAATGATCTGAAGCAGTCTTA
CATACATGGTTTGCGTACTTGCTCCTCCGACAGCCTTGACTGGCAAGTTC
CAAGAGAGAGCCTTCTGGAGTTGGGGTCTGGGATAATAGGATGACTGAAG
AAAGTTTGAGGAGATTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATGTNTTTTTNNNNNNTTNTTTTTTTTTNTTTTTTTTTTCTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTNTNTTTT
TNTTTTTTTTTTTTTTTNTNNNTTTTNTTTTTTTTTTTTTTTCTTCNTTT
CCCTTTTTTCCTTTTTCCCTTTTCCTCCCTTTTCCCCTCTTTTTTCCCTC
CTTTTCCCTTTCCTTCCTTTCCCTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_o09.b1 MSMg01no467_o09.b1 CHROMAT_FILE:
MSMg01no467_o09.b1 PHD_FILE: MSMg01no467_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:54 2005
         (296 letters)



>mm_chr5_14631574_14632269
          Length = 696

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatcattgtattctcaggtgttcatacatcttttgtctaaaatagagaacattttgag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 ctcatcattgtattctcaggtgttcatacatcttttgtttaaaatagagaacattttgag 437

                                                                       
Query: 61  gaagattctttcttaatgaagtcctcatgcagtttcctttaaataataaaagtggttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaagattctttcttaatgaagtcctcatgcagtttcctttaaataataaaagtggttatt 377

                                                                       
Query: 121 gttactgtaaaaggagtccctttaagtttctatttttcctgagtgactggtaaacttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttactgtaaaaggagtccctttaagtttctatttttcctgagtgactggtaaacttcta 317

                                                                       
Query: 181 gctcagtcctacactgtaacttgacctctctagcctttgttctatgaggagctactgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gctcagtcctacactgtaacttgacctctctagcctttgttctatgaggagctactgaga 257

                                                                   
Query: 241 tgtagatgccatctcaaatgcttctccctgctctcagccaattctctctgggtcta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtagatgccatctcaaatgcttctccctgctctcagccaattctctctgggtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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