BAC Information

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BAC

Clone NameMSMg01-468B08
Chromosome5 (Build37)
Map Location 18,382,569 - 18,382,954
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468B08.T7 (MSMg01no468_b08.b1)MSMg01-468B08.TJ (MSMg01no468_b08.g1)
ACCAG551638AG551639
length796801
length of high quality
(start - end)
440 (44 - 483)386 (76 - 461)
definitionCHROMAT_FILE: MSMg01no468_b08.b1 PHD_FILE: MSMg01no468_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:09 2005CHROMAT_FILE: MSMg01no468_b08.g1 PHD_FILE: MSMg01no468_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTAGACTGTTTCTTGTGTATTCTCTATGGTGTTTTTTTTTCTAATA
TTCACTTATTAGTGAATACATACCTTGTATATCCTTTTGGGTCTGAGTTA
CCCCACTCAGGATGATATTTTCGAGTTTCATCCATTTGCCTGCAAAACTT
AGGATGTCTTAGTTCTTAAAAGTTGAGTGGTATCCCATTGTGTAAATGAC
CCACATTTTCTGTATCCGTTATTCTGTTGTGGGGCATCTAGGTTGTTTTC
AGCTTCTGGCTATCACAAATAAGGCCACTATGAATATATTGGAACACGTG
TCCCTGTGGCCATGGTGGGGCAACTTTTGGGTATATAGCCAAGAGTGGTA
TACCTGGGTCTCCAGGTAGATTTATTTCCAATTGTTTGAGGAATCTCCAG
ATGGAGGAGTGTTCCTCTTTCTCCACATCCTGTCCAACATGTGTTGTCAC
CAGTGGTTTTGATCCTTACCATTCTGATTAGTGCAAGGGGGAATCTCAGG
GCTGTTTTTATTTGCCTTTCTCTGATCTCTATCGATTTTGAATATTCTCT
TTTGTGGTTTCAATCACGTCCAGAGCTCTTCGGACGTCATTCTTCTTTAA
GCTCCTTCTCTCTTTTTTCATTTTTTTACTCTTCTTTCCCTCTCTTTACT
CTATCTCTCGCCGTCTTTTTTTTTCTTGTTTTTAGATTCACCTCATTCTT
ATTTTTATTTTTTTTCTTTATCTCCCCTCACTTCCTCTCTTCCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGTGCTTGCTGGACATGTACAGC
AGTCTATAGGAAGAAAGGGAATTAAACCTGGACTTTGGCCACCAGGCTAC
ATGACTGGCAGTGGAGTGGTTGCAAAGCCTACATGAGCTAGGACATGAAG
ACCCAGAGCAAGAAGGAAAATAGTCCTACTCCTACATGCCTCAGACCAAG
AATTTTCAGGATTTGGACACATCTCAACCTTAGTGCTTTGGACTAGTGCC
CCTAGACATGTGGCTTTCTGGCCCTACATCATTTCACGTGTTAATGTACT
ACGTTTTCTTCATCCAGAAATCTTCATTGTGTCAAATATCTAGCAACTAT
TAATATAGCAGTAATGAACATGGTAAAGTAAGTGTCTTTGAGGTAGGATG
AAGGATCCTTTCAGTATCTATCCAATAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGCTATTCCCAGTTTCCTGAGAAACTGTCCTACTGATTTTCATACT
GGTCACTGCCCGTCGGGCCTCTTACAACGTCATCTTCCCCTTTGATTCTG
ATTGCTTACCACGGGACTCTTTATTACGCTCATACTCGTCTCCTTCCACT
CGTTCCCCCTTCACCCACTCCTCTCCTTTTCTCATCCTCTTAGCCGCCTC
TCCCTATGTCCCTCACTCTTCCTCGTCCCTACTTCTCTTTTTTCTCTCTA
CCTCTTCCTCCTTTTACATCTGTTCCTTCCTCGCATACTCCCTTTCCTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_b08.g1 MSMg01no468_b08.g1 CHROMAT_FILE:
MSMg01no468_b08.g1 PHD_FILE: MSMg01no468_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:09 2005
         (386 letters)



>mm_chr5_18382493_18383278
          Length = 786

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgcttgctggacatgtacagcagtctataggaagaaagggaattaaacctggactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catgtgcttgctggacatgtacagcagtctataggaagaaagggaattaaacctggactt 403

                                                                       
Query: 61  tggccaccaggctacatgactggcagtggagtggttgcaaagcctacatgagctaggaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 402 tggccaccaggctacatgactggcagtggaggggttgcaaagcctacatgagctaggaca 343

                                                                       
Query: 121 tgaagacccagagcaagaaggaaaatagtcctactcctacatgcctcagaccaagaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 342 tgaagacccagagcaagaaggaaaatagtcctactcctacatgcctcaggccaagaattt 283

                                                                       
Query: 181 tcaggatttggacacatctcaaccttagtgctttggactagtgcccctagacatgtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcaggatttggacacatctcaaccttagtgctttggactagtgcccctagacatgtggct 223

                                                                       
Query: 241 ttctggccctacatcatttcacgtgttaatgtactacgttttcttcatccagaaatcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttctggccctacatcatttcacgtgttaatgtactacgttttcttcatccagaaatcttc 163

                                                                       
Query: 301 attgtgtcaaatatctagcaactattaatatagcagtaatgaacatggtaaagtaagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 attgtgtcaaatatctagcaactattaatatagcagtaatgaacatggtaaagtaagtgt 103

                                     
Query: 361 ctttgaggtaggatgaaggatccttt 386
           ||||||||||||||||||||||||||
Sbjct: 102 ctttgaggtaggatgaaggatccttt 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)