BAC Information

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BAC

Clone NameMSMg01-468G09
Chromosome5 (Build37)
Map Location 39,180,825 - 39,181,002
singlet/doubletsinglet
Overlap geneClnk
Upstream geneMsx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik
Downstream geneLOC384174, Hs3st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468G09.T7 (MSMg01no468_g09.b1)MSMg01-468G09.TJ (MSMg01no468_g09.g1)
ACCAG551880AG551881
length818891
length of high quality
(start - end)
179 (142 - 320)50 (75 - 124)
definitionCHROMAT_FILE: MSMg01no468_g09.b1 PHD_FILE: MSMg01no468_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:36 2005CHROMAT_FILE: MSMg01no468_g09.g1 PHD_FILE: MSMg01no468_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTTAGACGCTATATGACTCTTAATTTCATAAAACCGNGGAAGT
CAGGCGTCTACCAAAAAAAAACGTCNGGAAATACTTGGAGATTTTTCGTG
TCCCTTGACAAATATTAACGCCATTTGTACCCACCGTTATGTTCTTCCCC
CATCCCCCAAGACCACTGGACATCCCAGCTGGCCCCTTTCCAACCACTCT
GTGTGTTTCTAGATTACCTTACTGAGACACAGTTTTGCACATCTTTGCCA
CGCCAAACTTTCCACTGTACACCTCCAGTCACACCAGCCCGCTGAGTCCT
CCAGGTTCTCCACCCTCTGACTATTCCATGTGTATCCAAACCTTAGGCCC
ATAGTTCTCCAGTGATAACTTCCTCCTCTAAATAGTTTTCACCAGTCTGT
TTGTGTAGTACCTTTGTCTCCATAGTGAATCAATCGTCTCGTCATCCTTC
TGTAAATTGAATGATTTTGTATCATCCTTAATTCTACATATTGTATCAAC
GCTCTATTTATCTTCCAGCTCTTTCACCCCTACTCTGTTTCTCCTTCATA
TTTTCTGTGTCTCTTTAACTTTCCTCTTTCACCTTTACCTTTTTATTCCT
ATTTCTCCTTTCTATATTACCCCTTTTATCCTTTCTTTCTACTATTTTAC
CACTTTCTTCTTCCTACTCCATTATTATTCCTCTCTTCACATTTTATAAT
CCTTTTATTTTCCTCACCTACCCACTCTCATTCATACTCATATTCACCCA
CTTTTTATTTCTCCCCTCTTTCTCTCCCACATTATCCTTTATTATTTTTT
TGCCTTTCCTCACTCCTG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAGTAATCAGGAGGGGATGAGGGA
AAAAAAAAAAGATGAAGGGGTGTGCTCTGCCTTAAACAAACAAACCAACT
ACAAAAATGGCGGGAAGATTTGTCTATGCCAGAGTTTCAAAGAAAATGAT
AACAAATTTCATTTCTTGAGTCTTTTGATGTCTTTGATCTATGAGTACGA
GTTTTATCATTTTATACCTGATATATCTGTGTATTATCACCACTACTCTC
GCCCTCAAGTCGAAAAGAATACCTCTTTTTTTTTTTTCTCCTGTCCCCTC
TTCTCCTCCCTCTCTTTTTTTCCTTCGTCTTAACTTCTCCTCCTTCTCTT
TTTCTTTATTTAATCTTTATTATTCCCCCCACTCGTCCCTCTTTCTTTCC
TTACCTTCGTTTTTCTATTCTTCCAACTTTCTCCACTTTATTTCCTTCTT
ATATCTTTCTCCACCCTTCCCCTTATTTCTTCCCCTATTTTATTCATTTT
TATATTTTATATATTTAATCTTTCATAATTTACATTTACCACATTTATAC
CATCTCACTTTTTTATGCGATCTCCTATACATTATCCCTCTTACTCTTTT
CCTTCTTTTCTCACATTTATCCTTATTACTTAGTACTATTATTTTTTTTA
TCTTAATCACCTTCTACTCTCATTAATTCCATTCCATCCCCTTCTATATC
TTTTTTTCTCTTTTTCTTTTATAATACTACTCTCTCTTATACTTTTTTTT
ATAATACAATCTACTATCTATCATCCTTATATATTTATTCATATTTCCTT
CTACCCCCTCTTTATTTNTCCCCTATTTAATGAACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_g09.b1 MSMg01no468_g09.b1 CHROMAT_FILE:
MSMg01no468_g09.b1 PHD_FILE: MSMg01no468_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:36 2005
         (179 letters)



>mm_chr5_39180624_39181202
          Length = 579

 Score =  321 bits (166), Expect = 1e-92
 Identities = 175/178 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcttcccccatcccccaagaccactggacatcccagctggcccctttccaaccactctgt 61
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 379 tcttcccccatcccccaagaccattggacatcccagctggcccatttccaaccactctgt 320

                                                                       
Query: 62  gtgtttctagattaccttactgagacacagttttgcacatctttgccacgccaaactttc 121
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgttcctagattaccttactgagacacagttttgcacatctttgccacgccaaactttc 260

                                                                     
Query: 122 cactgtacacctccagtcacaccagcccgctgagtcctccaggttctccaccctctga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cactgtacacctccagtcacaccagcccgctgagtcctccaggttctccaccctctga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)