BAC Information

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BAC

Clone NameMSMg01-468H01
Chromosome5 (Build37)
Map Location 24,625,534 - 24,625,712
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl7, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H01.T7 (MSMg01no468_h01.b1)MSMg01-468H01.TJ (MSMg01no468_h01.g1)
ACCAG551911AG551912
length828878
length of high quality
(start - end)
179 (74 - 252)---
definitionCHROMAT_FILE: MSMg01no468_h01.b1 PHD_FILE: MSMg01no468_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:39 2005CHROMAT_FILE: MSMg01no468_h01.g1 PHD_FILE: MSMg01no468_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCAGNATGTATTCCCTAATGACCTTGAACTTCTGATCCTCCTTGCCT
CTACTTCGCAGGTGCTGAGATCACAGGCCTCTCTTTTTGGCAGATGAGGG
GACTAAAGAACTTGCCCAGTGCCTTGTGCTATGTGGTGGATGAGAACTAG
CCTCTATCTTCTGCCTTACCCATACCCATAAATGCATGCCATGCCAAACA
AAGTGGCTTCAGTTTACACAACATTCCGTGCTATTCCGCCCTCCAGTTTC
TTGGCTTATAGACTGGTATTCCTAAGGCATTTATAATACCCTGGGTGAGA
ATTTGGCTAAAAAAGGTAGAAGCAGATTTGAGGGAGCTGACAGCATGGGA
ATGGGGGGAGGTAGCTGCGCTTCTCTCCTATTTTCCTCTTCTCTTTCTTC
CTTTCTTTCATCTCTTTGCTTTTTTTTCCTTCCTCTCTCATTTTTTTTTT
TTTTTTCCCCTTCTCCTTCTTTCTTTCTGTTCTTTCTTCTTTCTCCTTTT
TTTTTCCTCCTATCTTTTCTTTCATCTATTTCCTCTTTTTTTTTCCCCTT
TATTCTTTTCTTTCCTTCCCCTTATACTTTTTACCTTTTTTCTCCCTGTC
TTTTCCTCCTTTTCTTTTTCTTCCTTCTTTTTTTTTCCTTTTTCTTTTTC
TCTTTCTTTCCCATTTTTCTCATTTCCGTTTTCTTCTTTCCTCTCTTACC
TCTCTTACTTTCTTACTGTCCNTATTCTATTCCTCTCCTTTCCCCTCTTA
TTCTTCTATCTTTTTTTTCCATTTTTAT
TATCCTCTGTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCGCAATCACACACACGCCATTCAGGGTGACAGACAGG
TCATCTCAAGGAAACAAGCATGGGATTTCACTCCAGCCTTCTGGTAAGTG
TATATGTTAGTGGCGGGACGTTCCGCTCTCCTTTTCCCGTTCTCGTTTTT
CCATTCGTTTTTTTTGTCCTCGTTTCTCGTTTTATATTTTCTGTTTTTTC
GCGGCGTTTCGTTTTTCGTCTTTTATTATTGATCTTTTCTTTTATTCTCT
TGTTTTTTCTCGTTCTTTCCTCTTTTTCTTTTCGACGTCTGAATTTCAAC
CCCCTCTTTTTCCTTTATTTTTATTTTCTTTTATTTTTCCTTTTTTTTTT
TTGTGTTTTTTCCCATTTTTTCTTTCTCCCCCCCCCTTTTTTTTCTTTCT
CTTTTTTCTTATTTTCCTCCTCATTATCCCTTCTTCACTTCTCTTCCTCT
TTTTTTATCTCCTATTTTTATTTCTTTTTTTCTCTCATCTTTTTTCCGTC
TTTTTCTTCCCCCTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTTTTTATT
CTCCTTCTCTTTTTATCTCTTTTTTTCATACCCTTTTCTCTATCTCTTTT
TATTCTCTCCTCTCATCCCTATATTATTCCTTAGCCTTCATCTCTCTCCC
CCTCTCTTACTTTTTATTTTTTTATCTTTTTCTCTTTATCCCTTTTCTCT
TCCTTTATTCTCTCTTCTTTATCTACTCCTCTTCCTTCTTATCTACTTCT
TTAATCTAATTCCTCTCCTTTATCTTCTCTTATCTCTTATTATCCTTCTT
CCCATTTTTTTTTTTTTCTCTCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h01.b1 MSMg01no468_h01.b1 CHROMAT_FILE:
MSMg01no468_h01.b1 PHD_FILE: MSMg01no468_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:39 2005
         (179 letters)



>mm_chr5_24625276_24625854
          Length = 579

 Score =  315 bits (163), Expect = 8e-91
 Identities = 175/179 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttgaacttctgatcctccttgcctctacttcgcaggtgctgagatcacaggcctctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 437 accttgaacttctgatcctccttgcctctacttcgcatgtgctgagatcacaggcctttc 378

                                                                       
Query: 61  tttttggcagatgaggggactaaagaacttgcccagtgccttgtgctatgtggtggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttttggcagatgaggggactaaagaacttgcccagtgccttgtgctatgtggtggatga 318

                                                                      
Query: 121 gaactagcctctatcttctgccttacccatacccataaatgcatgccatgccaaacaaa 179
           |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 317 gaactagcctctattttctgccttacccatacccataaatgcatgcaatgccaaacaaa 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)