BAC Information

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BAC

Clone NameMSMg01-468M03
Chromosome5 (Build37)
Map Location 46,731,897 - 46,732,266
singlet/doubletsinglet
Overlap genenone
Upstream geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M03.T7 (MSMg01no468_m03.b1)MSMg01-468M03.TJ (MSMg01no468_m03.g1)
ACCAG552155AG552156
length818844
length of high quality
(start - end)
372 (48 - 419)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no468_m03.b1 PHD_FILE: MSMg01no468_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:05 2005CHROMAT_FILE: MSMg01no468_m03.g1 PHD_FILE: MSMg01no468_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCTCCTGTTCCTTGGCTGTAGGAAGAATGTGAACACCTTCCT
TACATATCTACCACCATGACTTCCTACCAGAATAGATTGTCCCCAGGAAG
TGTGAGCCAAAATAAATCCTTTCTCCCTCGAGTTTCCTTTTTCAGGGTAT
TTTATCACAGCAGCAAGAGAAGTAACTGAGCTAATAAGAGAGTGAAGAGC
TGGCTGTTTAGTTGACAGTGTTTCCTGGAGAATCCCAGAAAACATGCTGC
TTACTATGACACTAAGAAGTGTTCACAGAAGGAGCATTTTTTTAATAGGC
TTAACACTGATATGTTTGATAATGGGAAAACTGACATGAGACTGAACTCT
CCTACTTGTAGATGATGGGTTTGGGGAGTGGCTGAAGCAATATGGTTATA
TCTATACTTTAGTGACTTTTTGTTAGTTTCTGTCATTTAGTGTCACATAT
TTATTTCTTCAGTCGTGTCATGTTCCATCTCTTAGCTACTCACTTTTATC
TTTCATCATATTTTTTTTGGCTTCTACATATTTCTATGGTTTATTTTCCT
CTCTTTTATATTTTTCTTTCTCCGTATTTTTCTTTCCTATTTATTTAATT
TCTTCCTACCTTTCGCCCTTTCATTCTTCTTCTTCTTATATTATCCATCT
TTTCCTATTTTAATCCAATATTTTTCTCCCCTCTACTCTTCTCATTTTAT
TTTCCCCCTTTTTGTTTTCTCCTTTTTTTCCGCTCTTTTCCCCCTTTTCT
TTCCCCTCCCCCTCCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCGAAATATCTGACAGCAGGTGGGAGGCACCCTGAGT
CTTATCTCAGGAATGTAGATTCCTCCTTAACAGCCTGGGGTGTCAAGCTG
GGCTCAGCACATAACTCAGATCCTTAGAAGTCTTGGGAGTCAGGAAGAGA
TAAGGAAGAGGGGACTCTAATTCAACTTTTTAGGGTCTTTGGTGCCAGGA
AGAGATAGGGAGGAGGAGGTGACCAGCTCCTTAACACAAGTTCATTTGGC
TTATTAGGGTGGGAAACTGTGATTTTTTTTTCTTTCTCACGGTATGGTCT
CCAACAGATTAGTTTTACTAATGATGTTTTACTATTAGGTCTTATACTTT
AATAATGTTATTTATAGTCACTCGTATTTTCCCGGCACGTGCGATACGTA
ATACCTCCCTGCTGGTGTACTGTTATTCTCACATTTCCTTTCATCCTTAC
TTTATTTGTTTGCTTGCTTTTTTCTTTTATTCTTTCTCCTCTCTCTTTCT
CTTATCTTATTTGAGTTTCTATATTTTATCTACCTTCTTTTCTTGTTTTC
TCCGTCCTCTTCTCTACTCTCTTCTCTTCTCCATTCTGCTGCTCTCTCAT
CTTCCTTCTACCTTTTCCTCTGCTTCCTTTACTGGTTTTTCACTCTTTCC
ATTTCTCATCCTTTTCTATATTCATCTAACCATATGCATGATGTCTCTCT
TTCCTTCCTATAACATCGTACCTCGTTCTCTCTTATAGACTTTGCTCTTT
ATAGACGATCTCTCTTCGATCGTCCTGTTTTCTTCCCTTCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m03.b1 MSMg01no468_m03.b1 CHROMAT_FILE:
MSMg01no468_m03.b1 PHD_FILE: MSMg01no468_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:05 2005
         (372 letters)



>mm_chr5_46731694_46732466
          Length = 773

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/370 (98%), Gaps = 1/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctcctgttccttggctgtaggaagaatgtgaacaccttccttacatatcta 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattcatctcctgttccttggctgtaggaagaatgtgaacaccttccttacacatcta 263

                                                                       
Query: 64  ccaccatgacttcctaccagaatagattgtccccaggaagtgtgagccaaaataaatcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaccatgacttcctaccagaatagattgtccccaggaagtgtgagccaaaataaatcct 323

                                                                       
Query: 124 ttctccctcgagtttcctttttcagggtattttatcacagcagcaagagaagtaactgag 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctccctcgagtttcctttttcagagtattttatcacagcagcaagagaagtaactgag 383

                                                                       
Query: 184 ctaataagagagtgaagagctggctgtttagttgacagtgtttcctggagaatcccagaa 243
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 384 ctaataagagagtgaagagctggctgttaagttgactgtgtttcctggagaatcccagaa 443

                                                                       
Query: 244 aacatgctgcttactatgacactaagaagtgttcacagaaggagcattttttt-aatagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 aacatgctgcttactatgacactaagaagtgttcacagaaggagcattttttttaatagg 503

                                                                       
Query: 303 cttaacactgatatgtttgataatgggaaaactgacatgagactgaactctcctacttgt 362
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 cttaacactgatatgtttgataatgggaaaactgccatgagactgaactctcctacttgt 563

                     
Query: 363 agatgatggg 372
           ||||||||||
Sbjct: 564 agatgatggg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)