Query= MSMg01no469_a11.b1 MSMg01no469_a11.b1 CHROMAT_FILE:
MSMg01no469_a11.b1 PHD_FILE: MSMg01no469_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:27 2005
(241 letters)
>mm_chr5_39050694_39051334
Length = 641
Score = 333 bits (172), Expect = 7e-96
Identities = 240/304 (78%), Gaps = 63/304 (20%)
Strand = Plus / Minus
Query: 1 agtatgatttccccttttaaacatctttgaaaactggtgattgctagatgatcaatgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agtatgatttccccttttaaacatctttgaaaactggtgattgctagatgatcaatgggg 250
Query: 61 gtggggtagaggcg---------------------------------------------- 74
||||||||||||||
Sbjct: 249 gtggggtagaggcgagagcatgtagagatggcagtagagcatgtagagatggcagtagag 190
Query: 75 -----------------agagcatgtagagatggcagtagagcatgtagagaatggacct 117
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 catgtagagatggcagtagagcatgtagagatggcagtagagcatgtagagaatggacct 130
Query: 118 tgacctactactgttggagacccgcccctgcctctgttcagttaaaagctgtcactcctt 177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgacctactactgttggagacccacccctgcctctgttcagttaaaagctgtcactcctt 70
Query: 178 caggtaccactcaggagcctgcccataaggtttgtatagccccagtacttctgacatctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caggtaccactcaggagcctgcccataaggtttgtatagccccagtacttctgacatctg 10
Query: 238 gact 241
||||
Sbjct: 9 gact 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_a11.g1 MSMg01no469_a11.g1 CHROMAT_FILE:
MSMg01no469_a11.g1 PHD_FILE: MSMg01no469_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:27 2005
(282 letters)
>mm_chr5_38917234_38917915
Length = 682
Score = 540 bits (279), Expect = e-158
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 ggtgcccgctgtcagttctgatatccggtctaacccagcattgtatgaggacaagacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgcccgctgtcagttctgatatccggtctaacccagcattgtatgaggacaagacagg 260
Query: 61 ctaccctcctcgggtgccgcctgctgtcattcacccattgattccttgacacgaaagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccctcctcgggtgccgcctgctgtcattcacccattgattccttgacacgaaagcat 320
Query: 121 atgatctcaatggcaagcatgtttctgaccttgctctgtggtctgcatctcccacggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatctcaatggcaagcatgtttctgaccttgctctgtggtctgcatctcccacggtgt 380
Query: 181 aactaactttcttgacttctgttatccttttacacatgtatggcagaatcagtattaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaactttcttgacttctgttatccttttacacatgtatggcagaatcagtattaaga 440
Query: 241 accagagagganagtttttatggggactaaaacctgtaccca 282
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 accagagaggaaagtttttatggggactaaaacctgtaccca 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
