TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCCTCTTCGTCTGGATTGTTGTACTGACCAAGAGAAGTTTCATTC
CAGGGGAAAAGAATGGTCCACAGCGGTGTCTATCCCTAATAGGACGTATC
ATGAAGATGTCTCTTAACATGCCAGTATGGAAAGAAAATGGGGATCTCAT
TACCTTTTCTCATAGATACCAAATACAATGGCCATATGTTTACTAAATTC
TACATTGACATAAAACCTGTCACATTAATGAGGGTTGAAGCCAAAGATAT
TAATCATGTATTTCTGGGATTATTTCTTCTTTCCAGAAATGGGCTCATTA
GCATGACCCACTGGTGTAGATGAATCAAAGAGAAAATTTGAACAGAAGGT
AAAACAGAAAGAAAAAAAGAACCAATGCTGTTTAATGGCAAAGCATGATA
TGCATTTTGAATCTCCATTCAAAAACTCAATTAATGTTTGAACTGAGCAA
TTTTTCTAGAATCAAGACTGCCTCTAATCTGAACTACTTTACATGGAAAA
CTACTGCATCTAAAACTGTAAAATGTCTGTGATATAATTCTGCTCATCTG
TCTACTTGCTTGTATGGCCTTAAAAGCATATAATACACACATGCACACGC
ATAAAACCGAATCGTATGTGGCTTGTTCATGTTTCCAAATAGTACAGAAT
CTTCTCCCCGAGTATATTAATTAAATACCCTTTTTGTTGAGCGACACTGT
AAAACCTATATACCTGGGAGCTGGGATTCATTATGGAT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTCAGGCTTGTAGTCTCAGGAGAAAATT
GCCTGGTAAACTGTAGGCTGAAGCCATTCCAGAATGATCTAGCTGTATGT
AAAAAGACAGGGAGGCATTAAGTAGTATAGTCTGTAGGAAACTGCAGGAA
ATTTTGGTTCTGAAATGTAAAAGGGAGGAAAATACCATATGTGATTGCTA
AAAATCAGAAAAGGCTTTCATGCAATATGAAAAGTATAGCACCAACGAAA
AACAGACTGTTTCAATAATTTATGGGGATGCAATTGAGGGAATGTATATT
GGAAAAATATACAGTCTGTTTGTGTTCTTGAATCATAATGAATGCAATAG
AAAGAAAGAGAGTGCCCTGGAGATGTAGCTCAGTGGTAGAATGTTTGCCT
TTCAGGCAAGAAACCTTAACTTCCATCCTCAGGTCAGCATAAACCAGACG
TGATTAAGCATTTCAGTCTCAGCACTCGAATGGTACAGAAAGGTGTTCAA
GGACATCTTCAGCTCTCATTTAATACCGCAGATTCCGTATCTTACATTGA
ATACCTTTTCTAGCTGGGATCCATGATACAGGTTTTATTGCTATGCCCCT
TTTTTGTTTTTTTTGATACACCGAACTACCTTCATGTTCTCTCCTACCCG
GNACAATGGAGAAACCCCCCTTCCCAATTTTGTCCCTCGCGTCTCCATCT
CCATAACCCCTGCTCCCCTCCCCTTATTTTCTCTCCCGCTTTCG

Query= MSMg01no469_f20.b1 MSMg01no469_f20.b1 CHROMAT_FILE:
MSMg01no469_f20.b1 PHD_FILE: MSMg01no469_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:55 2005
         (500 letters)



>mm_chr5_49415889_49416788
          Length = 900

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgttgtactgaccaagagaagtttcattccaggggaaaagaatggtccacagcggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgttgtactgaccaagagaagtttcattccaggggaaaagaatggtccacagcggtgt 260

                                                                       
Query: 61  ctatccctaataggacgtatcatgaagatgtctcttaacatgccagtatggaaagaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatccctaataggacgtatcatgaagatgtctcttaacatgccagtatggaaagaaaat 320

                                                                       
Query: 121 ggggatctcattaccttttctcatagataccaaatacaatggccatatgtttactaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggatctcattaccttttctcatagataccaaatacaatggccatatgtttactaaatt 380

                                                                       
Query: 181 ctacattgacataaaacctgtcacattaatgagggttgaagccaaagatattaatcatgt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacattgacataaaacctgtcactttaatgagggttgaagccaaagatattaatcatgt 440

                                                                       
Query: 241 atttctgggattatttcttctttccagaaatgggctcattagcatgacccactggtgtag 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctgggatcatttcttctttccagaaatgggctcattagcatgacccactggtgtag 500

                                                                       
Query: 301 atgaatcaaagagaaaatttgaacagaaggtaaaacagaaagaaaaaaagaaccaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaatcaaagagaaaatttgaacagaaggtaaaacagaaagaaaaaaagaaccaatgct 560

                                                                       
Query: 361 gtttaatggcaaagcatgatatgcattttgaatctccattcaaaaactcaattaatgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttaatggcaaagcatgatatgcattttgaatctccattcaaaaactcaattaatgttt 620

                                                                       
Query: 421 gaactgagcaatttttctagaatcaagactgcctctaatctgaactactttacatggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gaactgagcaatttttctagaatcaagactgcctctaatctgaactaatttacatggaaa 680

                               
Query: 481 actactgcatctaaaactgt 500
           ||||||||||||||||||||
Sbjct: 681 actactgcatctaaaactgt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no469_f20.g1 MSMg01no469_f20.g1 CHROMAT_FILE:
MSMg01no469_f20.g1 PHD_FILE: MSMg01no469_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:56 2005
         (422 letters)



>mm_chr5_49617770_49618591
          Length = 822

 Score =  716 bits (370), Expect = 0.0
 Identities = 409/422 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttgtagtctcaggagaaaattgcctggtaaactgtaggctgaagccattccagaat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 541 aggcttgtagtctcaggagaaaattgcctggtaaactgcaggctgaagccattccagaat 482

                                                                       
Query: 61  gatctagctgtatgtaaaaagacagggaggcattaagtagtatagtctgtaggaaactgc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 481 gatctagctgtatgtaaaaagacagggaggcattaagtaatatagtctgtaggaaactgc 422

                                                                       
Query: 121 aggaaattttggttctgaaatgtaaaagggaggaaaataccatatgtgattgctaaaaat 180
           |||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct: 421 aggaaattctggttctgaaatgtagaagggaggaaaatatcatacgtgattgctaaaaat 362

                                                                       
Query: 181 cagaaaaggctttcatgcaatatgaaaagtatagcaccaacgaaaaacagactgtttcaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagaaaaggctttcatgcactatgaaaagtatagcaccaacgaaaaacagactgtttcaa 302

                                                                       
Query: 241 taatttatggggatgcaattgagggaatgtatattggaaaaatatacagtctgtttgtgt 300
           ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 taaattagggggatgcaattgagggaatgtatattggaaaaaaatacagtctgtttgtgt 242

                                                                       
Query: 301 tcttgaatcataatgaatgcaatagaaagaaagagagtgccctggagatgtagctcagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttgaatcataatgaatgcaatagaaagaaagagagtgccctggagatgtagctcagtg 182

                                                                       
Query: 361 gtagaatgtttgcctttcaggcaagaaaccttaacttccatcctcaggtcagcataaacc 420
           |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 181 gtagaatgtttgccttccaggcaagaaaccttgatttccatcctcaggtcagcataaacc 122

             
Query: 421 ag 422
           ||
Sbjct: 121 ag 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)