Query= MSMg01no469_h20.b1 MSMg01no469_h20.b1 CHROMAT_FILE:
MSMg01no469_h20.b1 PHD_FILE: MSMg01no469_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:06 2005
(571 letters)
>mm_chr5_17024762_17025734
Length = 973
Score = 658 bits (340), Expect = 0.0
Identities = 420/454 (92%), Gaps = 21/454 (4%)
Strand = Plus / Minus
Query: 1 aatccacagtgaattagtaaacttgtcttgtttgacaccaagactatcaagtgtatcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatccacagtgaattagtaaacttgtcttgtttgacaccaagactatcaagtgtatcagc 394
Query: 61 tgaaaaaaatcaggggctttaggatatctaaaggtcagcagatagatgtttctattaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaaaaaaatcaggggctttaggatatctaaaggtcagcagatagatgtttctattaaag 334
Query: 121 tcccttcagaattacaaaacaaataata-ctaaatgacagtgtacatgtaatactgttct 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 333 tcccttcagaattacaaaacaaataatagctaaatgacagtgtacatgtaatactgttct 274
Query: 180 gtttattattgtagataaacgtcaa-ttcttatgccaattttttatatattttatgtatg 238
|||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct: 273 gtttattattgtggataaatgtcaatttcttatgccaattttctatatattttatgtatg 214
Query: 239 tttaattgtatca--tttgt-ttatggtgacatacacctaaaggtgtactcccagcactt 295
||||||||||||| | || | ||||| ||||||||||||||||||||||| |||||
Sbjct: 213 tttaattgtatcagctgggtgtgatggt---atacacctaaaggtgtactcccaacactt 157
Query: 296 gggaggcagaggcaggtgaatttctgagtttgaggccagcctggtctacagaa-tgagtt 354
|||||||||||||||||||| ||||||||| |||||||| |||||||||| || ||||||
Sbjct: 156 gggaggcagaggcaggtgaagttctgagttcgaggccagactggtctaca-aagtgagtt 98
Query: 355 ccaggacagccagggctacacagagaaaccctctctcaaacaacaaaacaaaacaaacaa 414
|||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 97 ccagaacagccagggctacacagagaaaccctgtctcaa-----aaaacaa---aaacaa 46
Query: 415 acaaacaaacaaaacaaaacaaaaccaacaaaaa 448
|||| |||||||||||||||||| ||||||||
Sbjct: 45 acaatcaaacaaaacaaaacaaa---aacaaaaa 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space: 540243
Effective search space used: 540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_h20.g1 MSMg01no469_h20.g1 CHROMAT_FILE:
MSMg01no469_h20.g1 PHD_FILE: MSMg01no469_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:06 2005
(482 letters)
>mm_chr5_16903216_16904097
Length = 882
Score = 886 bits (458), Expect = 0.0
Identities = 476/482 (98%)
Strand = Plus / Plus
Query: 1 attcttgtgattagacattcatacatagatgataatttatgtggctcacctgtgaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttgtgattagacattcatacatagatgataatttatgtggctcacctgtgaagtaa 260
Query: 61 ataaaattgaagtaaaaatttagaaaatataaaacagagataaaactcttgctctcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaattgaagtaaaaatttagaaaatataaaacagagataaaactcttgctctcaagg 320
Query: 121 ttcttacaagttagaaaaaaagagagagaaatcaaacagatgatagaaaaaatctgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ttcttacaagttagaaaaaaagagagagaaatcaaacagatgatagaaaaattctgaaaa 380
Query: 181 ttaatgaccttatgcctgaataagatttcccagagtcttctacactttatgcaagttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatgaccttatgcctgaataagatttcccagagtcttctacactttatgcaagttcta 440
Query: 241 gaaaacaaatatttgattagtagggaatcagaaaagaacttctcaagggttgctcaagtt 300
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaacaaaaataggattagtagggaatcagaaaagaacttctcaagggttgctcaagtt 500
Query: 301 tttaagaaacagctgatatgctgagttattgttattgatcttgttttagctacttattta 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tttaagaaacagctgatatgctgagttattgttatttatcttgttttagctacttattta 560
Query: 361 cttgtcttagttagggttttactgctgtgaagacacaatgaccaagacaactcttatagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtcttagttagggttttactgctgtgaagacacaatgaccaagacaactcttatagg 620
Query: 421 gacaatatttaactggcccggcttccaggttcagaggttcagtcatcaaggtgggagcat 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 gacaatatttaactggcccggcttacaggttcagaggttcagtcatcaaggtgggagcat 680
Query: 481 gg 482
||
Sbjct: 681 gg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
