BAC Information

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BAC

Clone NameMSMg01-469K04
Chromosome5 (Build37)
Map Location 137,192,989 - 137,193,236
singlet/doubletsinglet
Overlap genenone
Upstream genePor, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469K04.T7 (MSMg01no469_k04.b1)MSMg01-469K04.TJ (MSMg01no469_k04.g1)
ACCAG552825AG552826
length773804
length of high quality
(start - end)
249 (71 - 319)49 (74 - 122)
definitionCHROMAT_FILE: MSMg01no469_k04.b1 PHD_FILE: MSMg01no469_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:17 2005CHROMAT_FILE: MSMg01no469_k04.g1 PHD_FILE: MSMg01no469_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATCTTTTGCAGCTGGGGTGGGGGGGAATTGCACATTGCTACA
CAGCTGTCAGGCTTGTGAACTGTGGTGTGTGTGTGGGGGGGCAGGAGTGG
CTTCTTTCAGCTGTTCAGAACTGCTCAGGAGAGTCCTAAGACTCAGCCGA
CACTGGGCCCCCCAGGATGATGGTAGAATACAGGGTCAGCCGCATGATGG
ACGTGCTAGGGACAGGAAGACAGTGTGGGGGGTTAGCTGTCCTGTATGGC
ACCTGCTAAGTAATGGATGTTTTTTTGTAGCCATGGGACTGTGGGGGAAG
AAGGCGGAGATAGCTCCTGATTTACAGGCACTGGGGAGGGAAATGCAGGC
AAGATTTATAGACACTCGAGCGACTTGTTGGAGCCGAGTTTATTATCCGT
CACAGGCATCTGGATGTGCATTTATGGCCTTCCAAACCATTCTGCCTTGA
AGAAAAACCATCTCCAGTAATGACTCTATAGAGAGCGTCGAGGCTTAGTG
AAGTTTTAGGCTTTTTCATGTTTCTTCCCCGATGCCCGTTCCTTGCGTCT
TCTATTTACACCTTGTCCATTGTTATTTGTTCACGGCCTCTGATTTCTTC
CCCTGCGCGCTTATTTTTTTTTTCGTCCTTTGGCGCCCTTCCCCCTGTCT
TGTCCGTGCTTTTTTTTTTTACATCTATTATTGCTCCCCTCTATTCTTTC
TCTATTTCCGCCCCATTCTCATC
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACTTGGGGGGGGGTCAGCAAACGCCAGGACA
GAGCTGCTGGCAGGGGTGGGGGGTTGGGGGGATGTACNCGCCCTCCCCCG
CCCCCCCCTCTTCCCCTCCCCTTGCTCCCCCTTCCGCCCCGTTCCCCCGC
GCCTCCGCCCTCCCCCGCCCTCCCCCCCGCCCCCCTGCTCCGGCCTCTTT
TTTTCTCCCGCCGCCCCGNGCNGGCCTTCCCCCCCCTCTTCGTTTCCCCT
GTTGCCGCCCCTTTTTCCTAGCTCTCCCCCCGCCCCCGCCCCCCTCCCCT
TGCCCTTTTTTTCCCCCCTCCCCCTGCCCGTTCGCGCCCTCCCCTTCTCC
CCCCCCCCTTTCCCCCCCCCCTTCCCCCTCCCTCCCCCCCTCGCTCCTCT
CCCCCCCCCTTTTTTACCCCCTTCCCCCCCCCCCTCCCTTTCCTCCCCCT
CCCTACCCCCCCCCGCCCTCCTCCCCTTTTTCCCCCCCCTCCCCCCCCCC
CCCTCCCTTCCCCCCCTTCCTCTCCGCTCCCCCTCCCCCCTCTTTTTTCT
CCATCCTCTTCTCCCCCCCCCCTCTCCCTCCCCCCCCCCTCCCCCTCTCC
CCTCTTTTCCCCCCCCCCCCCCTTTCTTTCTCCCTCCTCCTTCCCCCCTC
CCCTCCTCCCCTCCTCCCCCCTTTTTCCCCTCCCCCACCCCTTTCTCCCG
CCCCCCCTTTTCCCCCTCTCCTTTCCCCCCCTTCCTCTTCCCCCCCCTCC
CCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_k04.b1 MSMg01no469_k04.b1 CHROMAT_FILE:
MSMg01no469_k04.b1 PHD_FILE: MSMg01no469_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:17 2005
         (249 letters)



>mm_chr5_137192782_137193436
          Length = 655

 Score =  437 bits (226), Expect = e-127
 Identities = 240/248 (96%), Gaps = 6/248 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggggggaattgcacattgctacacagctgtcaggcttgtgaactgtggtgtgtgtgtggg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 ggggggaattgcacattgctacacagctgtcaggcttgtgaactgtggtgtttgtgtggg 267

                                                                       
Query: 68  g------gggcaggagtggcttctttcagctgttcagaactgctcaggagagtcctaaga 121
           |      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggggggtgggcaggagtggcttctttcagctgttcagaactgctcaggagagtcctaaga 327

                                                                       
Query: 122 ctcagccgacactgggccccccaggatgatggtagaatacagggtcagccgcatgatgga 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 328 ctcagccgacactgggccccccaggatgatggtagaatacagggtcagccacatgatgga 387

                                                                       
Query: 182 cgtgctagggacaggaagacagtgtggggggttagctgtcctgtatggcacctgctaagt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cgtgctagggacaggaagacagtgtggggggttagctgtcctgtatggcacctgctaagt 447

                   
Query: 242 aatggatg 249
           ||||||||
Sbjct: 448 aatggatg 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 655
Length adjustment: 9
Effective length of query: 240
Effective length of database: 646
Effective search space:   155040
Effective search space used:   155040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)