BAC Information

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BAC

Clone NameMSMg01-469M13
Chromosome5 (Build37)
Map Location 106,250,074 - 106,250,304
singlet/doubletsinglet
Overlap genenone
Upstream geneC230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335
Downstream geneD830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469M13.T7 (MSMg01no469_m13.b1)MSMg01-469M13.TJ (MSMg01no469_m13.g1)
ACCAG552938AG552939
length760765
length of high quality
(start - end)
231 (85 - 315)387 (73 - 459)
definitionCHROMAT_FILE: MSMg01no469_m13.b1 PHD_FILE: MSMg01no469_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:28 2005CHROMAT_FILE: MSMg01no469_m13.g1 PHD_FILE: MSMg01no469_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAAATTTGCGGCCGCTAAAAGAANCANTTTTCGTACCTGGATCCGCG
GAANNCANGGCTTTCTAAAACTTACGNGANNNNCAAAGACAAACTGACCC
TACAGAGCTTGTCAAACTCCCCGCCCCTCCAGGATTCTTGTGCCTTCTGC
TGAGATGTAGGCAGTTTCCCAGGGACATTCTGTGGTCAGCTGGGCCTGTG
AAAAGTGTTGGGGGGTTTAGAGCTTTGTACAAGTGTGCATGCCACTGGAT
TTTTTATAGAACCTTCAAATCTCACAGTCTTGAGTATGTTAAAACTTTTT
ATTGCTTGAGACAGTCTTCTTAATTTGCAGCTCTGGCTGGCCTGGAGCTC
AGACAGATCTGCTTGCCTCTGCCTCTTGAGTGCTCTTTCATGCCACCATA
GCCCCCTACTGACCCTTTTAATTATAATTTTAGAGCAATCAAAATGGTAT
ATTAAATTGTTCAGACACTTATAAGGTGTGACTCTCCTTTCAGAAGCCCA
CAGTGGGGCTGTAGAGATACTTCTGCAGGGGTCTCTGTTTCAGCTCCCAG
AATCCACTCAGTGGCTCACAACTGTCTTTCTATTCCAGTGTCTGGGTATC
CCACAGCCTCTCCTATATTCTTCCACCACCATTAATGCCAATAGCGCACT
TATTTTTTTGTTCTAACAAACACCCATACCCGCAATCACTCATTCCTTCT
TCTCCTCCCTTTATGACCCTTCTCTCACCCGCTTGTTCCGCTCTCTTTTA
TATCACTTGT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGGTCTTAGCATGTTCCCCATCATCC
TGAAGCAGCTGGTCTGATAGAAAGATGGAATGGCCTTTTGAAGACGCAGT
TACAGCGCCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGTAGAGTTCTT
CAGAAGGCAGTATATGCTTTGAATCAGCGCTTGATATATGGTACAGTTTC
TCCCATAGCCAGGATTCATGGGTCCAGGAATCAAGGGGTGGAAAACGGAA
TAGTTCCACTTTCTTTTACTCCTAGTGACCCTCTAGGAAAAATTTTGCTT
CCTGTCCCCATAACTCTAGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAGA
GAGGGGAGTGCTCCTACCAGGAGCTACAACAAACATTCCACTGAACTGGA
AGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAATGCCCTTAAACCAA
CAGGCTAATATAGGAATAACCGCGTTAGGAGGGGCGATAGATCCAGATTA
CCCTGGCTTAATTGCACTACCTCTTCACTATGGCACTTCGCACGACCATG
TCTGGACTGTATTAGATCTCTTTACCATGTCCCGCGACCAAAGTCTTTGC
CTATCTTTGACCCCTTACCTCCTTCCTCTATGTTTCAGGCTTTTTACCCC
TTATTCTTGCTTTTTCGTCTTCCCCCTCCTTCCTATTGATTCTATATCTC
TTCTTTTCGCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_m13.b1 MSMg01no469_m13.b1 CHROMAT_FILE:
MSMg01no469_m13.b1 PHD_FILE: MSMg01no469_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:28 2005
         (231 letters)



>mm_chr5_106249874_106250504
          Length = 631

 Score =  369 bits (191), Expect = e-107
 Identities = 221/235 (94%), Gaps = 8/235 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagacaaactgaccctacagagcttgtcaaactccccgcccctccaggattcttgtgcc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 431 aaagacaaactgaccctacagagcttgtcatactccccgcccctccaggattcttgtgcc 372

                                                                       
Query: 61  ttctgctgagatgtaggcagtttcccagggacattctgtggtcagctgggcctgtgaaaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 ttctgctgagatgtaggcagtttccccgggacattctgtggtcagctgggcctgtgaaaa 312

                                                                       
Query: 121 gtgttggggggtttagagctttgtacaagtgtgcatgccactgga----ttttttataga 176
           ||||||||||||||||||||||||||||||||||| |||||||||    ||    | |||
Sbjct: 311 gtgttggggggtttagagctttgtacaagtgtgcacgccactggagcagtt----agaga 256

                                                                  
Query: 177 accttcaaatctcacagtcttgagtatgttaaaactttttattgcttgagacagt 231
           |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 accttcaaatttcacagtcttgagtatgttaaaactttttattgtttgagacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)